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Open source software

An Automated Image Analysis System to Measure and Count Organisms in Laboratory Microcosms

François Mallard, Vincent Le Bourlot, Thomas Tully

published 29 May 2013

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Dispec: A Novel Peptide Scoring Algorithm Based on Peptide Matching Discriminability

Chuan-Le Xiao, Xiao-Zhou Chen, Yang-Li Du, Zhe-Fu Li, Li Wei, Gong Zhang, Qing-Yu He

published 13 May 2013

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IMACULAT — An Open Access Package for the Quantitative Analysis of Chromosome Localization in the Nucleus

Ishita Mehta, Sandeep Chakraborty, Basuthkar J. Rao

published 08 Apr 2013

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Assessment of Shape Changes of Mistletoe Berries: A New Software Approach to Automatize the Parameterization of Path Curve Shaped Contours

Renatus Derbidge, Linus Feiten, Oliver Conradt, Peter Heusser, Stephan Baumgartner

published 02 Apr 2013

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Open-Source 3D-Printable Optics Equipment

Chenlong Zhang, Nicholas C. Anzalone, Rodrigo P. Faria, Joshua M. Pearce

published 27 Mar 2013

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SNPflow: A Lightweight Application for the Processing, Storing and Automatic Quality Checking of Genotyping Assays

Hansi Weissensteiner, Margot Haun, Sebastian Schönherr, Mathias Neuner, Lukas Forer, Günther Specht, Anita Kloss-Brandstätter, Florian Kronenberg, Stefan Coassin

published 19 Mar 2013

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SHRINE: Enabling Nationally Scalable Multi-Site Disease Studies

Andrew J. McMurry, Shawn N. Murphy, Douglas MacFadden, Griffin Weber, William W. Simons, John Orechia, Jonathan Bickel, Nich Wattanasin, Clint Gilbert, Philip Trevvett, Susanne Churchill, Isaac S. Kohane

published 07 Mar 2013

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Community Intelligence in Knowledge Curation: An Application to Managing Scientific Nomenclature

Lin Dai, Chao Xu, Ming Tian, Jian Sang, Dong Zou, Ang Li, Guocheng Liu, Fei Chen, Jiayan Wu, Jingfa Xiao, Xumin Wang, Jun Yu, Zhang Zhang

published 25 Feb 2013

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WormSizer: High-throughput Analysis of Nematode Size and Shape

Brad T. Moore, James M. Jordan, L. Ryan Baugh

published 22 Feb 2013

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OpenCFU, a New Free and Open-Source Software to Count Cell Colonies and Other Circular Objects

Quentin Geissmann

published 15 Feb 2013

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The Connectome Mapper: An Open-Source Processing Pipeline to Map Connectomes with MRI

Alessandro Daducci, Stephan Gerhard, Alessandra Griffa, Alia Lemkaddem, Leila Cammoun, Xavier Gigandet, Reto Meuli, Patric Hagmann, Jean-Philippe Thiran

published 18 Dec 2012

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Pituitary Adenoma Volumetry with 3D Slicer

Jan Egger, Tina Kapur, Christopher Nimsky, Ron Kikinis

published 11 Dec 2012

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Tract Profiles of White Matter Properties: Automating Fiber-Tract Quantification

Jason D. Yeatman, Robert F. Dougherty, Nathaniel J. Myall, Brian A. Wandell, Heidi M. Feldman

published 14 Nov 2012

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