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Open source software

An Automated Image Analysis System to Measure and Count Organisms in Laboratory Microcosms

François Mallard, Vincent Le Bourlot, Thomas Tully

Dispec: A Novel Peptide Scoring Algorithm Based on Peptide Matching Discriminability

Chuan-Le Xiao, Xiao-Zhou Chen, [ ... ], Qing-Yu He

IMACULAT — An Open Access Package for the Quantitative Analysis of Chromosome Localization in the Nucleus

Ishita Mehta, Sandeep Chakraborty, Basuthkar J. Rao

Assessment of Shape Changes of Mistletoe Berries: A New Software Approach to Automatize the Parameterization of Path Curve Shaped Contours

Renatus Derbidge, Linus Feiten, [ ... ], Stephan Baumgartner

Open-Source 3D-Printable Optics Equipment

Chenlong Zhang, Nicholas C. Anzalone, Rodrigo P. Faria, Joshua M. Pearce

SNPflow: A Lightweight Application for the Processing, Storing and Automatic Quality Checking of Genotyping Assays

Hansi Weissensteiner, Margot Haun, [ ... ], Stefan Coassin

SHRINE: Enabling Nationally Scalable Multi-Site Disease Studies

Andrew J. McMurry, Shawn N. Murphy, [ ... ], Isaac S. Kohane

Community Intelligence in Knowledge Curation: An Application to Managing Scientific Nomenclature

Lin Dai, Chao Xu, [ ... ], Zhang Zhang

WormSizer: High-throughput Analysis of Nematode Size and Shape

Brad T. Moore, James M. Jordan, L. Ryan Baugh

OpenCFU, a New Free and Open-Source Software to Count Cell Colonies and Other Circular Objects

Quentin Geissmann

The Connectome Mapper: An Open-Source Processing Pipeline to Map Connectomes with MRI

Alessandro Daducci, Stephan Gerhard, [ ... ], Jean-Philippe Thiran

Pituitary Adenoma Volumetry with 3D Slicer

Jan Egger, Tina Kapur, Christopher Nimsky, Ron Kikinis

Tract Profiles of White Matter Properties: Automating Fiber-Tract Quantification

Jason D. Yeatman, Robert F. Dougherty, [ ... ], Heidi M. Feldman

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