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Open source software

WiseEye: Next Generation Expandable and Programmable Camera Trap Platform for Wildlife Research

Sajid Nazir, Scott Newey, R. Justin Irvine, Fabio Verdicchio, Paul Davidson, Gorry Fairhurst, René van der Wal

published 11 Jan 2017

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GlycCompSoft: Software for Automated Comparison of Low Molecular Weight Heparins Using Top-Down LC/MS Data

Xiaohua Wang, Xinyue Liu, Lingyun Li, Fuming Zhang, Min Hu, Fuji Ren, Lianli Chi, Robert J. Linhardt

published 12 Dec 2016

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IBiSA_Tools: A Computational Toolkit for Ion-Binding State Analysis in Molecular Dynamics Trajectories of Ion Channels

Kota Kasahara, Kengo Kinoshita

published 01 Dec 2016

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Vidjil: A Web Platform for Analysis of High-Throughput Repertoire Sequencing

Marc Duez, Mathieu Giraud, Ryan Herbert, Tatiana Rocher, Mikaël Salson, Florian Thonier

published 11 Nov 2016

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BioPPSy: An Open-Source Platform for QSAR/QSPR Analysis

Marta Enciso, Nastaran Meftahi, Michael L. Walker, Brian J. Smith

published 10 Nov 2016

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TCGA Expedition: A Data Acquisition and Management System for TCGA Data

Uma R. Chandran, Olga P. Medvedeva, M. Michael Barmada, Philip D. Blood, Anish Chakka, Soumya Luthra, Antonio Ferreira, Kim F. Wong, Adrian V. Lee, Zhihui Zhang, Robert Budden, J. Ray Scott, Annerose Berndt, Jeremy M. Berg, Rebecca S. Jacobson

published 27 Oct 2016

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Glioblastoma Segmentation: Comparison of Three Different Software Packages

Even Hovig Fyllingen, Anne Line Stensjøen, Erik Magnus Berntsen, Ole Solheim, Ingerid Reinertsen

published 25 Oct 2016

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Real-Time Tele-Mentored Low Cost “Point-of-Care US” in the Hands of Paediatricians in the Emergency Department: Diagnostic Accuracy Compared to Expert Radiologists

Floriana Zennaro, Elena Neri, Federico Nappi, Daniele Grosso, Riccardo Triunfo, Francesco Cabras, Francesca Frexia, Stefania Norbedo, Pierpaolo Guastalla, Massino Gregori, Elisabetta Cattaruzzi, Daniela Sanabor, Egidio Barbi, Marzia Lazzerini

published 17 Oct 2016

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Image-Based Single Cell Profiling: High-Throughput Processing of Mother Machine Experiments

Christian Carsten Sachs, Alexander Grünberger, Stefan Helfrich, Christopher Probst, Wolfgang Wiechert, Dietrich Kohlheyer, Katharina Nöh

published 23 Sep 2016

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Prediction Interval: What to Expect When You’re Expecting … A Replication

Jeffrey R. Spence, David J. Stanley

published 19 Sep 2016

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FRETBursts: An Open Source Toolkit for Analysis of Freely-Diffusing Single-Molecule FRET

Antonino Ingargiola, Eitan Lerner, SangYoon Chung, Shimon Weiss, Xavier Michalet

published 17 Aug 2016

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Astroglia in Thick Tissue with Super Resolution and Cellular Reconstruction

Sean J. Miller, Jeffrey D. Rothstein

published 05 Aug 2016

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An Optimized Small Tissue Handling System for Immunohistochemistry and In Situ Hybridization

Giovanni Anthony, Ju-Ahng Lee

published 04 Aug 2016

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