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Open source software

SlideJ: An ImageJ plugin for automated processing of whole slide images

Vincenzo Della Mea, Giulia L. Baroni, David Pilutti, Carla Di Loreto

A method for rapid 3D scanning and replication of large paleontological specimens

Anshuman J. Das, Denise C. Murmann, Kenneth Cohrn, Ramesh Raskar

The application of multi-baseline digital close-range photogrammetry in three-dimensional imaging and measurement of dental casts

Xiaoming Fu, Chun Peng, [ ... ], Jinlin Song

Three-dimensional characterization of root morphology for maxillary incisors

Carly A. Ahlbrecht, Antonio Carlos de Oliveira Ruellas, [ ... ], Lucia Helena Soares Cevidanes

DeepNano: Deep recurrent neural networks for base calling in MinION nanopore reads

Vladimír Boža, Broňa Brejová, Tomáš Vinař

From medical imaging data to 3D printed anatomical models

Thore M. Bücking, Emma R. Hill, [ ... ], Daniil I. Nikitichev

Singularity: Scientific containers for mobility of compute

Gregory M. Kurtzer, Vanessa Sochat, Michael W. Bauer

Underreporting of high-risk water and sanitation practices undermines progress on global targets

Sridhar Vedachalam, Luke H. MacDonald, [ ... ], On behalf of PMA2020 investigators

3D Forest: An application for descriptions of three-dimensional forest structures using terrestrial LiDAR

Jan Trochta, Martin Krůček, Tomáš Vrška, Kamil Král

Computation of adherence to medication and visualization of medication histories in R with AdhereR: Towards transparent and reproducible use of electronic healthcare data

Alexandra Lelia Dima, Dan Dediu

phylo-node: A molecular phylogenetic toolkit using Node.js

Damien M. O’Halloran

SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata

Benjamin C. Hitz, Laurence D. Rowe, [ ... ], J. Michael Cherry

Simple agarose micro-confinement array and machine-learning-based classification for analyzing the patterned differentiation of mesenchymal stem cells

Nobuyuki Tanaka, Tadahiro Yamashita, [ ... ], Yo Tanaka

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