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Open source software

FeAture Explorer (FAE): A tool for developing and comparing radiomics models

Yang Song, Jing Zhang, Yu-dong Zhang, Ying Hou, Xu Yan, Yida Wang, Minxiong Zhou, Ye-feng Yao, Guang Yang

published 17 Aug 2020

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A rapid and cost-effective pipeline for digitization of museum specimens with 3D photogrammetry

Joshua J. Medina, James M. Maley, Siddharth Sannapareddy, Noah N. Medina, Cyril M. Gilman, John E. McCormack

published 13 Aug 2020

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A high-throughput imaging and quantification pipeline for the EVOS imaging platform

Stefan Donovan Klimaj, Yamhilette Licon Munoz, Katelyn Del Toro, William Curtis Hines

published 05 Aug 2020

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An image J plugin for the high throughput image analysis of in vitro scratch wound healing assays

Alejandra Suarez-Arnedo, Felipe Torres Figueroa, Camila Clavijo, Pablo Arbeláez, Juan C. Cruz, Carolina Muñoz-Camargo

published 28 Jul 2020

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Assessing the impact of introductory programming workshops on the computational reproducibility of biomedical workflows

Ariel Deardorff

published 08 Jul 2020

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1024-pixel image matrix for chest CT – Impact on image quality of bronchial structures in phantoms and patients

André Euler, Katharina Martini, Bettina Baessler, Matthias Eberhard, Friederike Schoeck, Hatem Alkadhi, Thomas Frauenfelder

published 16 Jun 2020

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Review of the application of the open-source software CilOCT for semi-automatic segmentation and analysis of the ciliary muscle in OCT images

Torsten Straßer, Sandra Wagner, Eberhart Zrenner

published 09 Jun 2020

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Effects of a pressure-ulcer audit and feedback regional programme at 1 and 2 years in nursing homes: A prospective longitudinal study

Lorenzo Righi, Aimad Ourahmoune, Nadine Béné, Anne-Claire Rae, Delphine S. Courvoisier, Pierre Chopard

published 29 May 2020

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Methodology for radiochromic film analysis using FilmQA Pro and ImageJ

Michelle E. Howard, Michael G. Herman, Michael P. Grams

published 21 May 2020

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A semi-automated machine-learning based workflow for ellipsoid zone analysis in eyes with macular edema: SCORE2 pilot study

Tyler Etheridge, Ellen T. A. Dobson, Marcel Wiedenmann, Chandana Papudesu, Ingrid U. Scott, Michael S. Ip, Kevin W. Eliceiri, Barbara A. Blodi, Amitha Domalpally

published 30 Apr 2020

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Implementing novel, flexible, and powerful survey designs in R Shiny

Aaron R. Kaufman

published 30 Apr 2020

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Traffic exhaust to wildfires: PM_2.5 measurements with fixed and portable, low-cost LoRaWAN-connected sensors

Hugh Forehead, Johan Barthelemy, Bilal Arshad, Nicolas Verstaevel, Owen Price, Pascal Perez

published 24 Apr 2020

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Empirical study of the relationship between design patterns and code smells

Mahmoud Alfadel, Khalid Aljasser, Mohammad Alshayeb

published 16 Apr 2020

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