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Ontologies

A Formal Algorithm for Verifying the Validity of Clustering Results Based on Model Checking

Shaobin Huang, Yuan Cheng, [ ... ], Guofeng Liu

Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the Biological Collections Ontology and Related Ontologies

Ramona L. Walls, John Deck, [ ... ], John Wooley

Knowledge Extraction and Semantic Annotation of Text from the Encyclopedia of Life

Anne E. Thessen, Cynthia Sims Parr

Semantic Particularity Measure for Functional Characterization of Gene Sets Using Gene Ontology

Charles Bettembourg, Christian Diot, Olivier Dameron

Embryonic Caffeine Exposure Acts via A1 Adenosine Receptors to Alter Adult Cardiac Function and DNA Methylation in Mice

Daniela L. Buscariollo, Xiefan Fang, [ ... ], Christopher C. Wendler

Mining Rare Associations between Biological Ontologies

Fernando Benites, Svenja Simon, Elena Sapozhnikova

Mechanistic Phenotypes: An Aggregative Phenotyping Strategy to Identify Disease Mechanisms Using GWAS Data

Jonathan D. Mosley, Sara L. Van Driest, [ ... ], Dan M. Roden

The Mouse Age Phenome Knowledgebase and Disease-Specific Inter-Species Age Mapping

Nophar Geifman, Eitan Rubin

Collective Instance-Level Gene Normalization on the IGN Corpus

Hong-Jie Dai, Johnny Chi-Yang Wu, Richard Tzong-Han Tsai

An Algorithm for Network-Based Gene Prioritization That Encodes Knowledge Both in Nodes and in Links

Chad Kimmel, Shyam Visweswaran

Using a Search Engine-Based Mutually Reinforcing Approach to Assess the Semantic Relatedness of Biomedical Terms

Yi-Yu Hsu, Hung-Yu Chen, Hung-Yu Kao

Semantic Annotation of Mutable Data

Robert A. Morris, Lei Dou, [ ... ], Paul J. Morris

Learning to Recognize Phenotype Candidates in the Auto-Immune Literature Using SVM Re-Ranking

Nigel Collier, Mai-vu Tran, [ ... ], Dietrich Rebholz-Schuhmann

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