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Nucleotides

High-performance protocol for ultra-short DNA sequencing using Oxford Nanopore Technology (ONT)

Lukas Žemaitis, Rūta Palepšienė, Simonas Juzėnas, Gediminas Alzbutas, Pierre-Yves Burgi, Thomas Heinis, Jérôme Charmet, Silvia Angeloni Suter, Martin Jost, Renaldas Raišutis, Friedrich Simmel, Ignas Galminas

published 29 Apr 2025

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SORFPP: Enhancing rich sequence-driven information to identify SEPs based on fused framework on validation datasets

Hongqi Feng, Qi Nie, Sen Yang

published 28 Apr 2025

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Solute carrier family 2 member 2 (glucose transporter 2): a common factor of hepatocyte and hepatocellular carcinoma differentiation

Yejin Kim, Yu Yeuni, Hye Jin Heo, Eun Sun Kim, Kyungjae Myung, Ninib Baryawno, Yun Hak Kim, Chang-Kyu Oh

published 25 Apr 2025

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Collaborative metabolic curation of an emerging model marine bacterium, Alteromonas macleodii ATCC 27126

Daniel Sher, Emma E. George, Matthias Wietz, Scott Gifford, Luca Zoccarato, Osnat Weissberg, Coco Koedooder, Waseem Bashir Valiya Kalladi, Marcelo M. Barreto Filho, Raul Mireles, Stas Malavin, Michal Liddor Naim, Tal Idan, Vibhaw Shrivastava, Lynne Itelson, Dagan Sade, Alhan Abu Hamoud, Yara Soussan-Farhat, Noga Barak, Peter Karp, Lisa R. Moore

published 24 Apr 2025

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Repression of ctrA and chpT by a transcriptional regulator of the Xre family that is expressed by RpoN3 and its cognate activator protein in Cereibacter sphaeroides

Benjamín Vega-Baray, José Hernández-Valle, Sebastián Poggio, Laura Camarena

published 15 Apr 2025

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Mapping the temporal transcriptomic signature of a viral pathogen through CAGE and nanopore sequencing

Dóra Tombácz, Balázs Kakuk, Gábor Torma, Ádám Fülöp, Ákos Dörmő, Gábor Gulyás, Zsolt Csabai, Zsolt Boldogkői

published 15 Apr 2025

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Trafficking of the telomerase RNA using a novel genetic approach

Jessica K. Day, Brett J. Palmero, Amanda L. Allred, Junya Li, Fatima B. Hooda, Graeme Witte, Alexandra M. Dejneka, Anna M. Sandler, Karen E. Kirk

published 02 Apr 2025

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The impact of software and criteria on the selection of best-fit nucleotide substitution models for molecular evolutionary genetic analysis

Xingguang Li, Olayinka Sunday Okoh, Nídia Sequeira Trovão

published 26 Mar 2025

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Genetic diversity of Aedes aegypti populations from Kisumu and Busia counties, western Kenya, and their vector competence for chikungunya virus

Victor O. Anyango, Solomon Langat, Francis Mulwa, James Mutisya, Hellen Koka, Collins Okoyo, Edith Chepkorir, Samson Konongoi, Anncarol Karanja, Glennah Kerubo, Rosemary Sang, Joel Lutomiah

published 25 Mar 2025

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Microevolution and phylogenomic study of Respiratory Syncytial Virus type A

Ashfaq Ahmad, Sidra Majaz, Aamir Saeed, Shumaila Noreen, Muhammad Abbas, Bilal Khan, Hamid Ur Rahman, Faisal Nouroz, Yingqiu Xie, Abdur Rashid, Atta Ur Rehman

published 25 Feb 2025

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Revisiting CPSF30-mediated alternative polyadenylation in Arabidopsis thaliana

Guijie Hao, Lichun Zhou, Huazhen Liu, Pradeep Kachroo, Arthur G. Hunt

published 24 Feb 2025

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Isolation and characterization of 24 phages infecting the plant growth-promoting rhizobacterium Klebsiella sp. M5al

Marissa R. Gittrich, Courtney M. Sanderson, James M. Wainaina, Cara M. Noel, Jonathan E. Leopold, Erica Babusci, Sumeyra C. Selbes, Olivia R. Farinas, Jack Caine, Joshua Davis II, Vivek K. Mutalik, Paul Hyman, Matthew B. Sullivan

published 21 Feb 2025

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Semi-rational evolution of a recombinant DNA polymerase for modified nucleotide incorporation efficiency

Lili Zhai, Zi Wang, Fen Liu, Chongjun Xu, Jingjing Wang, Hongyan Han, Qingqing Xie, Wenwei Zhang, Yue Zheng, Alexander K. Buell, Yuliang Dong

published 14 Feb 2025

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