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Nucleotides

Bisulphite sequencing in the presence of cytosine-conversion errors

Thomas James Ellis, Viktoria Nizhynska, Rahul Pisupati, Almudena Mollá-Morales, Magnus Nordborg

published 21 May 2025

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Understanding the epidemiology and pathogenesis of Mycobacterium tuberculosis with non-redundant pangenome of epidemic strains in China

Yang Zhou, Richard Anthony, Shengfen Wang, Hui Xia, Xichao Ou, Bing Zhao, Yuanyuan Song, Yang Zheng, Ping He, Dongxin Liu, Yanlin Zhao, Dick van Soolingen

published 19 May 2025

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Allosteric modulation of Plasmodium falciparum Isoleucyl tRNA synthetase by South African natural compounds

Curtis Chepsiror, Wayde Veldman, Fisayo Olotu, Özlem Tastan Bishop

published 14 May 2025

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A mechanism of global gene expression regulation is disrupted by multiple disease states and drug treatments

Benjamin S. Pickard

published 08 May 2025

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CRISPR genome editing using a combined positive and negative selection system

Ishrya Sharma, Kerisa Hall, Shannon Moonah

published 06 May 2025

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Inhibition of xpt Guanine Riboswitch by a synthetic nucleoside analog

Swapan S. Jain, Emily C. McLaughlin, Gabriel G. Perron, Mallikarjunachari Uppuladinne, Seoyoung Kim, Katherina Gindinova, Silvie H. Lundgren, Liad Elmelech, Uddhavesh Sonavane, Rajendra Joshi, Korrapati Narasimhulu

published 05 May 2025

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Epigenetic background of lineage-specific gene expression landscapes of four Staphylococcus aureus hospital isolates

Ilya S. Korotetskiy, Sergey V. Shilov, Tatyana V. Kuznetsova, Natalya Zubenko, Lyudmila Ivanova, Oleg N. Reva

published 05 May 2025

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Zebrafish Polymerase Theta and human Polymerase Theta: Orthologues with homologous function

Corey Thomas, Sydney Green, Lily Kimball, Isaiah R. Schmidtke, Lauren Rothwell, Makayla Griffin, Ivy Par, Sophia Schobel, Yayleene Palacio, Jamie B. Towle-Weicksel, Steven E. Weicksel

published 29 Apr 2025

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High-performance protocol for ultra-short DNA sequencing using Oxford Nanopore Technology (ONT)

Lukas Žemaitis, Rūta Palepšienė, Simonas Juzėnas, Gediminas Alzbutas, Pierre-Yves Burgi, Thomas Heinis, Jérôme Charmet, Silvia Angeloni Suter, Martin Jost, Renaldas Raišutis, Friedrich Simmel, Ignas Galminas

published 29 Apr 2025

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SORFPP: Enhancing rich sequence-driven information to identify SEPs based on fused framework on validation datasets

Hongqi Feng, Qi Nie, Sen Yang

published 28 Apr 2025

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Solute carrier family 2 member 2 (glucose transporter 2): a common factor of hepatocyte and hepatocellular carcinoma differentiation

Yejin Kim, Yu Yeuni, Hye Jin Heo, Eun Sun Kim, Kyungjae Myung, Ninib Baryawno, Yun Hak Kim, Chang-Kyu Oh

published 25 Apr 2025

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Collaborative metabolic curation of an emerging model marine bacterium, Alteromonas macleodii ATCC 27126

Daniel Sher, Emma E. George, Matthias Wietz, Scott Gifford, Luca Zoccarato, Osnat Weissberg, Coco Koedooder, Waseem Bashir Valiya Kalladi, Marcelo M. Barreto Filho, Raul Mireles, Stas Malavin, Michal Liddor Naim, Tal Idan, Vibhaw Shrivastava, Lynne Itelson, Dagan Sade, Alhan Abu Hamoud, Yara Soussan-Farhat, Noga Barak, Peter Karp, Lisa R. Moore

published 24 Apr 2025

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Repression of ctrA and chpT by a transcriptional regulator of the Xre family that is expressed by RpoN3 and its cognate activator protein in Cereibacter sphaeroides

Benjamín Vega-Baray, José Hernández-Valle, Sebastián Poggio, Laura Camarena

published 15 Apr 2025

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