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Nucleotide sequencing

CI-SpliceAI—Improving machine learning predictions of disease causing splicing variants using curated alternative splice sites

Yaron Strauch, Jenny Lord, Mahesan Niranjan, Diana Baralle

published 03 Jun 2022

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A Borrelia burgdorferi outer surface protein C (OspC) genotyping method using Luminex technology

Patrick Pearson, Olivia Skaltsis, Chu-Yuan Luo, Guang Xu, Zachary Oppler, Dustin Brisson, Stephen M. Rich

published 01 Jun 2022

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Machine learning predicts translation initiation sites in neurologic diseases with nucleotide repeat expansions

Alec C. Gleason, Ghanashyam Ghadge, Jin Chen, Yoshifumi Sonobe, Raymond P. Roos

published 01 Jun 2022

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Diverse human and bat-like rotavirus G3 strains circulating in suburban Bangkok

Fajar Budi Lestari, Sompong Vongpunsawad, Yong Poovorawan

published 24 May 2022

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Direct assessment of possible mutations in the 23S rRNA gene encoding macrolide resistance in Chlamydia trachomatis

J. M. van Niekerk, I. H. M. van Loo, M. Lucchesi, S. A. Morré, C. J. P. A. Hoebe, N. H. T. M. Dukers-Muijrers, P. F. G. Wolffs

published 10 May 2022

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The Escherichia coli serS gene promoter region overlaps with the rarA gene

Kanika Jain, Tyler H. Stanage, Elizabeth A. Wood, Michael M. Cox

published 15 Apr 2022

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Genetic diversity of the cultivated Salvia miltiorrhiza populations revealed by four intergenic spacers

Jie Feng, Fang Liao, Deying Kong, Ruihua Ren, Tao Sun, Wei Liu, Yanyan Yin, Haoyu Ma, Jiahao Tang, Guanrong Li

published 06 Apr 2022

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Comparison of different sequencing techniques for identification of SARS-CoV-2 variants of concern with multiplex real-time PCR

Diyanath Ranasinghe, Tibutius Thanesh Pramanayagam Jayadas, Deshni Jayathilaka, Chandima Jeewandara, Osanda Dissanayake, Dinuka Guruge, Dinuka Ariyaratne, Dumni Gunasinghe, Laksiri Gomes, Ayesha Wijesinghe, Ruwan Wijayamuni, Gathsaurie Neelika Malavige

published 04 Apr 2022

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Untangling population structure and genetic diversity of reticulocyte binding protein 2b (PvRBP2b) erythrocytic stage vaccine candidate in worldwide Plasmodium vivax isolates

Leila Nourani, Akram Abouie Mehrizi, Sedigheh Zakeri, Navid Dinparast Djadid

published 29 Mar 2022

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Genotyping of familial Mediterranean fever gene (MEFV)—Single nucleotide polymorphism—Comparison of Nanopore with conventional Sanger sequencing

Jonas Schmidt, Sandro Berghaus, Frithjof Blessing, Holger Herbeck, Josef Blessing, Peter Schierack, Stefan Rödiger, Dirk Roggenbuck, Folker Wenzel

published 17 Mar 2022

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Genetic and hosts characterization of hantaviruses in port areas in Hainan Province, P. R. China

Qiu-wei Wang, Li Tao, Su-ying Lu, Chang-qiang Zhu, Le-le Ai, Yizhe Luo, Rong-bin Yu, Heng Lv, Yun Zhang, Chong-cai Wang, Wei-long Tan

published 03 Mar 2022

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Travel ban effects on SARS-CoV-2 transmission lineages in the UAE as inferred by genomic epidemiology

Andreas Henschel, Samuel F. Feng, Rifat A. Hamoudi, Gihan Daw Elbait, Ernesto Damiani, Fathimathuz Waasia, Guan K. Tay, Bassam H. Mahboub, Maimunah Hemayet Uddin, Juan Acuna, Eman Alefishat, Rabih Halwani, Herbert F. Jelinek, Farah Mustafa, Nawal Alkaabi, Habiba S. Alsafar, on behalf of the UAE COVID-19 Collaborative Partnership

published 02 Mar 2022

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Molecular detection and genetic characterization of small rodents associated Bartonella species in Zhongtiao Mountain, China

Juan Yu, Xiong-Ying Zhang, Yun-Xia Chen, Hong-Bing Cheng, Dong-Mei Li, Hua-Xiang Rao

published 28 Feb 2022

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