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Nucleotide sequencing

Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae

Ryota Yamano, Juanwen Yu, Alfabetian Harjuno Condro Haditomo, Chunqi Jiang, Sayaka Mino, Jesús L. Romalde, Kyuhee Kang, Yuichi Sakai, Tomoo Sawabe

published 02 Jun 2023

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PyKleeBarcode: Enabling representation of the whole animal kingdom in information space

Wandrille Duchemin, David S. Thaler

published 02 Jun 2023

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Temporal convolutional network for a Fast DNA mutation detection in breast cancer data

Untari Novia Wisesty, Tati Rajab Mengko, Ayu Purwarianti, Adi Pancoro

published 25 May 2023

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Dry- down probe free qPCR for detection of KFD in resource limited settings

Pooja Yadav, Shashi Sharma, Paban Kumar Dash, Suman Dhankher, Sandhya V. K., S. K. Kiran

published 10 May 2023

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Mirage2’s high-quality spliced protein-to-genome mappings produce accurate multiple-sequence alignments of isoforms

Alexander J. Nord, Travis J. Wheeler

published 08 May 2023

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In-silico prediction of RT-qPCR-high resolution melting for broad detection of emaraviruses

Alejandro Olmedo-Velarde, Francisco M. Ochoa-Corona, Adriana E. Larrea-Sarmiento, Toufic Elbeaino, Francisco Flores

published 08 May 2023

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Modeling SARS-CoV-2 nucleotide mutations as a stochastic process

Maverick Lim Kai Rong, Ercan Engin Kuruoglu, Wai Kin Victor Chan

published 28 Apr 2023

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Wastewater surveillance of SARS-CoV-2 genomic populations on a country-wide scale through targeted sequencing

Florencia Cancela, Natalia Ramos, Davida S. Smyth, Claudia Etchebehere, Mabel Berois, Jesica Rodríguez, Caterina Rufo, Alicia Alemán, Liliana Borzacconi, Julieta López, Elizabeth González, Germán Botto, Starla G. Thornhill, Santiago Mirazo, Mónica Trujillo

published 21 Apr 2023

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Phylogenetic trees of closely related bacterial species and subspecies based on frequencies of short nucleotide sequences

Yoshio Nakano, Yusaku Domon, Kenji Yamagishi

published 20 Apr 2023

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Designed and validated novel allele-specific primer to differentiate Kernel Row Number (KRN) in tropical field corn

Ganapati Mukri, Kumari Shilpa, R. N. Gadag, Jayant S. Bhat, Chandu Singh, Navin C. Gupta, Chandra Prabha, Sahana Police Patil

published 12 Apr 2023

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Rapid genomic surveillance of SARS-CoV-2 in a dense urban community of Kathmandu Valley using sewage samples

Rajindra Napit, Prajwol Manandhar, Ashok Chaudhary, Bishwo Shrestha, Ajit Poudel, Roji Raut, Saman Pradhan, Samita Raut, Pragun G. Rajbhandari, Anupama Gurung, Rajesh M. Rajbhandari, Sameer M. Dixit, Jessica S. Schwind, Christine K. Johnson, Jonna K. Mazet, Dibesh B. Karmacharya

published 30 Mar 2023

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Clonal isolates of Treponema pallidum subsp. pallidum Nichols provide evidence for the occurrence of microevolution during experimental rabbit infection and in vitro culture

Diane G. Edmondson, Bridget D. De Lay, Blake M. Hanson, Lindsay E. Kowis, Steven J. Norris

published 14 Mar 2023

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Role of ribosome recycling factor in natural termination and translational coupling as a ribosome releasing factor

Yoshio Inokuchi, Fabio Quaglia, Akikazu Hirashima, Yoshihiro Yamamoto, Hideko Kaji, Akira Kaji

published 24 Feb 2023

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