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Nucleotide sequencing

Detection of SARS-CoV-2 and a possible variant in shelter cats

Ogi Okwumabua, Nancy Bradley-Siemens, Catherine Cruz, Lauren Chittick, Melissa Thompson

published 13 Jan 2025

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Plasmodium falciparum surf_4.1 in clinical isolates: From genetic variation and variant diversity to in silico design immunopeptides for vaccine development

Nitchakarn Noranate, Jariya Sripanomphong, Fingani Annie Mphande- Nyasulu, Suwanna Chaorattanakawee

published 30 Dec 2024

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Assessment of salivary microRNA by RT-qPCR: Facing challenges in data interpretation for clinical diagnosis

Marc Van Der Hofstadt, Anna Cardinal, Morgane Lepeltier, Jérémy Boulestreau, Alimata Ouedraogo, Malik Kahli, Pierre Champigneux, Laurence Molina, Franck Molina, Thi Nhu Ngoc Van

published 10 Dec 2024

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Evaluation of VP4-VP2 sequencing for molecular typing of human enteroviruses

Kouichi Kitamura, Minetaro Arita

published 10 Dec 2024

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stilPCR increases the effective sequencing length of Illumina targeted next-generation sequencing

Jason D. Limberis, Roland J. Nagel, Soumitesh Chakravorty, Dena Block, Scott Dewell, Alina Nalyvayko, Zach Howard, Grant Theron, Rouxjeane Venter, John Z. Metcalfe

published 09 Dec 2024

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High-throughput Kinetics using capillary Electrophoresis and Robotics (HiKER) platform used to study T7, T3, and Sp6 RNA polymerase misincorporation

Zachariah I. Carter, William B. O’Brien, Sean Lund, Andrew F. Gardner

published 02 Dec 2024

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Applying a cytochrome c oxidase I barcode for Leishmania species typing

Carlos Mata-Somarribas, Grazielle Cardoso das Graças, Luiza de Oliveira R. Pereira, Mariana Côrtes Boité, Lilian Motta Cantanhêde, Camila Patrício Braga Filgueira, Adrián Fallas, Leana Quirós-Rojas, Karina A. Morelli, Gabriel Eduardo Melim Ferreira, Elisa Cupolillo

published 02 Dec 2024

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A cryptic promoter in the exon of HKR1 drives expression of a truncated form of Hkr1 in Saccharomyces cerevisiae

Toshihiro Kondo, Yuna Hosokawa, Ryotaro Ozawa, Shin Kasahara

published 21 Nov 2024

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Classical cadherins evolutionary constraints in primates is associated with their expression in the central nervous system

Max Petersen, Fredy Reyes-Vigil, Marc Campo, Juan L. Brusés

published 21 Nov 2024

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Avidity sequencing of whole genomes from retinal degeneration pedigrees identifies causal variants

Pooja Biswas, Adda Villanueva, Benjamin J. Krajacich, Juan Moreno, Junhua Zhao, Anne Marie Berry, Danielle Lazaro, Bryan R. Lajoie, Semyon Kruglyak, Radha Ayyagari

published 04 Oct 2024

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GenerRNA: A generative pre-trained language model for de novo RNA design

Yichong Zhao, Kenta Oono, Hiroki Takizawa, Masaaki Kotera

published 01 Oct 2024

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Mitochondrial phylogeny and distribution of cytoplasmic male sterility-associated genes in Beta vulgaris

Keishi Kubota, Mion Oishi, Eigo Taniguchi, Akiho Akazawa, Katsunori Matsui, Kazuyoshi Kitazaki, Atsushi Toyoda, Hidehiro Toh, Hiroaki Matsuhira, Yosuke Kuroda, Tomohiko Kubo

published 27 Sep 2024

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Graph-based analysis of DNA sequence comparison in closed cotton species: A generalized method to unveil genetic connections

Riaz Hussain Khan, Nadeem Salamat, A. Q. Baig, Zaffar Ahmed Shaikh, Amr Yousef

published 17 Sep 2024

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