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Nucleotide sequencing

Microbiome Profiling by Illumina Sequencing of Combinatorial Sequence-Tagged PCR Products

Gregory B. Gloor, Ruben Hummelen, [ ... ], Gregor Reid

A workflow with R: Phylogenetic analyses and visualizations using mitochondrial cytochrome b gene sequences

Emine Toparslan, Kemal Karabag, Ugur Bilge

Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli

Alfredo Mendoza-Vargas, Leticia Olvera, [ ... ], Enrique Morett

sgRNAcas9: A Software Package for Designing CRISPR sgRNA and Evaluating Potential Off-Target Cleavage Sites

Shengsong Xie, Bin Shen, [ ... ], Yonglian Zhang

CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool

Manuel Stemmer, Thomas Thumberger, [ ... ], Juan L. Mateo

Genomic Analysis of Pseudomonas putida Phage tf with Localized Single-Strand DNA Interruptions

Anatoly S. Glukhov, Antonina I. Krutilina, [ ... ], Leonid A. Kulakov

Multilocus Sequence Typing Breathes Life into a Microbial Metagenome

Eshwar Mahenthiralingam, Adam Baldwin, [ ... ], Chris G. Dowson

Genetic Evidence of Geographical Groups among Neanderthals

Virginie Fabre, Silvana Condemi, Anna Degioanni

Whole Genome Amplification and De novo Assembly of Single Bacterial Cells

Sébastien Rodrigue, Rex R. Malmstrom, [ ... ], Sallie W. Chisholm

C. elegans Mutant Identification with a One-Step Whole-Genome-Sequencing and SNP Mapping Strategy

Maria Doitsidou, Richard J. Poole, [ ... ], Oliver Hobert

Benefits and Challenges with Applying Unique Molecular Identifiers in Next Generation Sequencing to Detect Low Frequency Mutations

Ruqin Kou, Ham Lam, [ ... ], Shihong Li

Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol

Vasco Elbrecht, Florian Leese

Taxonomic Reliability of DNA Sequences in Public Sequence Databases: A Fungal Perspective

R. Henrik Nilsson, Martin Ryberg, [ ... ], Urmas Kõljalg

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