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Nucleotide sequencing

Optimizing genomic diversity assessments for conservation of Bromus auleticus (Trinius ex Nees) using individual and pooled sequencing

Luciana Gillman, Federico Condón, Cesar Petroli, Mercedes Rivas

published 25 Jun 2025

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rbpTransformer: A novel deep learning model for prediction of piRNA and mRNA bindings

Ahmet Gürhanlı

published 25 Jun 2025

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DeepRice6mA: A convolutional neural network approach for 6mA site prediction in the rice Genome

Hussam Alsharif

published 18 Jun 2025

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Adaptation of PCR-based library preparation for MGI platform for cancer mutation testing in clinical setting

P.A. Shatalov, M.P. Raygorodskaya, A.P. Shinkarkina, A.A. Traspov, A.V. Murzaeva, Y.A. Doroshenko, I.A. Leuhina, V.A. Mileyko, M. V. Ivanov, T.V. Grigoreva, A. A. Lebedeva, E.M. Veselovsky, L.D. Belyaeva, E. V. Belova, A.D. Kaprin, P.V. Shegai

published 04 Jun 2025

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SORFPP: Enhancing rich sequence-driven information to identify SEPs based on fused framework on validation datasets

Hongqi Feng, Qi Nie, Sen Yang

published 28 Apr 2025

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Cryptic biodiversity of freshwater fish species in Bangladesh

Mahmudul Hasan, Chiaki Kambayashi, Zahid Hasan Anik, Md. Saiful Islam

published 28 Apr 2025

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Identification of potential riboswitch elements in Homo sapiens mRNA 5’UTR sequences using positive-unlabeled machine learning

William S Raymond, Jacob DeRoo, Brian Munsky

published 24 Apr 2025

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The impact of software and criteria on the selection of best-fit nucleotide substitution models for molecular evolutionary genetic analysis

Xingguang Li, Olayinka Sunday Okoh, Nídia Sequeira Trovão

published 26 Mar 2025

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Revolutionizing Molecular cloning: Introducing FastCloneAssist, a Streamlined Python tool for optimizing primer design in restriction & ligation-independent PCR cloning

Pradip Kumar Singh, Michael S. Donnenberg

published 13 Mar 2025

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Semi-rational evolution of a recombinant DNA polymerase for modified nucleotide incorporation efficiency

Lili Zhai, Zi Wang, Fen Liu, Chongjun Xu, Jingjing Wang, Hongyan Han, Qingqing Xie, Wenwei Zhang, Yue Zheng, Alexander K. Buell, Yuliang Dong

published 14 Feb 2025

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A new method for the reproducible development of aptamers (Neomers)

Cathal Meehan, Erika L. Hamilton, Chloé G. Mansour, Soizic Lecocq, Cole J. Drake, Yisi An, Emily Rodrigues, Gregory Penner

published 12 Feb 2025

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Whole-genome sequence analysis of SFTS bunyavirus in Huzhou, China

Deshun Xu, Lei Ji, Xiaofang Wu, Liping Chen

published 11 Feb 2025

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AutoPVPrimer: A comprehensive AI-Enhanced pipeline for efficient plant virus primer design and assessment

Abozar Ghorbani, Mahsa Rostami, Elham Ashrafi-Dehkordi, Pietro Hiram Guzzi

published 30 Jan 2025

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