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Nucleic acid analysis

Two-step mixed model approach to analyzing differential alternative RNA splicing

Li Luo, Huining Kang, Xichen Li, Scott A. Ness, Christine A. Stidley

published 09 Oct 2020

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RNAthor – fast, accurate normalization, visualization and statistical analysis of RNA probing data resolved by capillary electrophoresis

Julita Gumna, Tomasz Zok, Kacper Figurski, Katarzyna Pachulska-Wieczorek, Marta Szachniuk

published 01 Oct 2020

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Genome-wide identification and characterization of microRNAs by small RNA sequencing for low nitrogen stress in potato

Jagesh Kumar Tiwari, Tanuja Buckseth, Rasna Zinta, Aastha Saraswati, Rajesh Kumar Singh, Shashi Rawat, Swarup Kumar Chakrabarti

published 19 May 2020

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SMART-Q: An Integrative Pipeline Quantifying Cell Type-Specific RNA Transcription

Xiaoyu Yang, Seth Bergenholtz, Lenka Maliskova, Mark-Phillip Pebworth, Arnold R. Kriegstein, Yun Li, Yin Shen

published 29 Apr 2020

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Accumulation of unacetylatable Snf2p at the INO1 promoter is detrimental to remodeler recycling supply for CUP1 induction

Michelle Esposito, Goldie Libby Sherr, Anthony Esposito, George Kaluski, Farris Ellington, Chang-Hui Shen

published 25 Mar 2020

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Comparison of procedures for RNA-extraction from peripheral blood mononuclear cells

Antonio Rodríguez, Hans Duyvejonck, Jonas D. Van Belleghem, Tessa Gryp, Leen Van Simaey, Stefan Vermeulen, Els Van Mechelen, Mario Vaneechoutte

published 21 Feb 2020

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Housekeeping gene validation for RT-qPCR studies on synovial fibroblasts derived from healthy and osteoarthritic patients with focus on mechanical loading

Ute Nazet, Agnes Schröder, Susanne Grässel, Dominique Muschter, Peter Proff, Christian Kirschneck

published 06 Dec 2019

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SparkGA2: Production-quality memory-efficient Apache Spark based genome analysis framework

Hamid Mushtaq, Nauman Ahmed, Zaid Al-Ars

published 05 Dec 2019

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Conformation and mechanical property of rpoS mRNA inhibitory stem studied by optical tweezers and X-ray scattering

Xinyao Hu, Xuanling Li, Lingna Yang, Yilin Zhu, Yunyu Shi, Yinmei Li, Haowei Wang, Qingguo Gong

published 26 Sep 2019

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Development of a new extraction method based on high-intensity ultra-sonication to study RNA regulation of the filamentous cyanobacteria Planktothrix

Sandra Kim Tiam, Katia Comte, Caroline Dalle, Charlotte Duval, Claire Pancrace, Muriel Gugger, Benjamin Marie, Claude Yéprémian, Cécile Bernard

published 06 Sep 2019

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Gene expression association study in feline mammary carcinomas

Daniela Ferreira, Bárbara Martins, Maria Soares, Jorge Correia, Filomena Adega, Fernando Ferreira, Raquel Chaves

published 28 Aug 2019

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Systemic expression of Alu RNA in patients with geographic atrophy secondary to age-related macular degeneration

Hiroyuki Yoshida, Tokiyoshi Matsushita, Erika Kimura, Yukie Fujita, Robert Keany, Toshihiro Ikeda, Masanao Toshimori, Takahiro Imanaka, Masatsugu Nakamura

published 19 Aug 2019

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Haplotype and linkage disequilibrium of TP53-WRAP53 locus in Iranian-Azeri women with breast cancer

Nasser Pouladi, Sepehr Abdolahi, Davoud Farajzadeh, Mohammad Ali Hosseinpour Feizi

published 06 Aug 2019

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