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Network motifs

Positive Feedback Promotes Oscillations in Negative Feedback Loops

Bharath Ananthasubramaniam, Hanspeter Herzel

Bayesian Parameter Inference and Model Selection by Population Annealing in Systems Biology

Yohei Murakami

Measuring Symmetry, Asymmetry and Randomness in Neural Network Connectivity

Umberto Esposito, Michele Giugliano, Mark van Rossum, Eleni Vasilaki

Integrative Identification of Deregulated MiRNA/TF-Mediated Gene Regulatory Loops and Networks in Prostate Cancer

Ali Sobhi Afshar, Joseph Xu, John Goutsias

Identifying Emerging Motif in Growing Networks

Haijia Shi, Lei Shi

The Index-Based Subgraph Matching Algorithm with General Symmetries (ISMAGS): Exploiting Symmetry for Faster Subgraph Enumeration

Maarten Houbraken, Sofie Demeyer, [ ... ], Mario Pickavet

Small Modifications to Network Topology Can Induce Stochastic Bistable Spiking Dynamics in a Balanced Cortical Model

Mark D. McDonnell, Lawrence M. Ward

Key Bifurcations of Bursting Polyrhythms in 3-Cell Central Pattern Generators

Jeremy Wojcik, Justus Schwabedal, Robert Clewley, Andrey L. Shilnikov

Dense Neuron Clustering Explains Connectivity Statistics in Cortical Microcircuits

Vladimir V. Klinshov, Jun-nosuke Teramae, Vladimir I. Nekorkin, Tomoki Fukai

Synergistic and Antagonistic Drug Combinations Depend on Network Topology

Ning Yin, Wenzhe Ma, [ ... ], Luhua Lai

Mapping Network Motif Tunability and Robustness in the Design of Synthetic Signaling Circuits

Sergio Iadevaia, Luay K. Nakhleh, Robert Azencott, Prahlad T. Ram

A Method for Predicting Protein-Protein Interaction Types

Yael Silberberg, Martin Kupiec, Roded Sharan

STEME: A Robust, Accurate Motif Finder for Large Data Sets

John E. Reid, Lorenz Wernisch

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