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Network motifs

Structural power and the evolution of collective fairness in social networks

Fernando P. Santos, Jorge M. Pacheco, Ana Paiva, Francisco C. Santos

ML2Motif—Reliable extraction of discriminative sequence motifs from learning machines

Marina M. -C. Vidovic, Marius Kloft, Klaus-Robert Müller, Nico Görnitz

MI-Sim: A MATLAB package for the numerical analysis of microbial ecological interactions

Matthew J. Wade, Jordan Oakley, [ ... ], Jan Dolfing

Robust network topologies for generating oscillations with temperature-independent periods

Lili Wu, Qi Ouyang, Hongli Wang

Linking Hematopoietic Differentiation to Co-Expressed Sets of Pluripotency-Associated and Imprinted Genes and to Regulatory microRNA-Transcription Factor Motifs

Mohamed Hamed, Johannes Trumm, [ ... ], Volkhard Helms

Tracking the Evolution of Infrastructure Systems and Mass Responses Using Publically Available Data

Xiangyang Guan, Cynthia Chen, Dan Work

Evaluating Transcription Factor Activity Changes by Scoring Unexplained Target Genes in Expression Data

Evi Berchtold, Gergely Csaba, Ralf Zimmer

A Regulated Double-Negative Feedback Decodes the Temporal Gradient of Input Stimulation in a Cell Signaling Network

Sang-Min Park, Sung-Young Shin, Kwang-Hyun Cho

CLIMP: Clustering Motifs via Maximal Cliques with Parallel Computing Design

Shaoqiang Zhang, Yong Chen

Studying Dynamic Features in Myocardial Infarction Progression by Integrating miRNA-Transcription Factor Co-Regulatory Networks and Time-Series RNA Expression Data from Peripheral Blood Mononuclear Cells

Hongbo Shi, Guangde Zhang, [ ... ], Weimin Li

Unraveling Kinase Activation Dynamics Using Kinase-Substrate Relationships from Temporal Large-Scale Phosphoproteomics Studies

Westa Domanova, James Krycer, [ ... ], Zdenka Kuncic

Sequence- and Structure-Based Analysis of Tissue-Specific Phosphorylation Sites

Nermin Pinar Karabulut, Dmitrij Frishman

Nation Building and Social Signaling in Southern Ontario: A.D. 1350–1650

John P. Hart, Termeh Shafie, [ ... ], Ronald F. Williamson

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