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Network motifs

Failure Tolerance of Motif Structure in Biological Networks

Baharan Mirzasoleiman, Mahdi Jalili

Dynamical Patterns of Cattle Trade Movements

Paolo Bajardi, Alain Barrat, [ ... ], Vittoria Colizza

Bistability and Oscillations in Gene Regulation Mediated by Small Noncoding RNAs

Dengyu Liu, Xiao Chang, [ ... ], Ruiqi Wang

Colored Motifs Reveal Computational Building Blocks in the C. elegans Brain

Jifeng Qian, Arend Hintze, Christoph Adami

Automatic Network Fingerprinting through Single-Node Motifs

Christoph Echtermeyer, Luciano da Fontoura Costa, Francisco A. Rodrigues, Marcus Kaiser

Large-Scale Discovery and Characterization of Protein Regulatory Motifs in Eukaryotes

Daniel S. Lieber, Olivier Elemento, Saeed Tavazoie

Minimal Gene Regulatory Circuits for a Lysis-Lysogeny Choice in the Presence of Noise

Mikkel Avlund, Sandeep Krishna, [ ... ], Kim Sneppen

Comparing Brain Networks of Different Size and Connectivity Density Using Graph Theory

Bernadette C. M. van Wijk, Cornelis J. Stam, Andreas Daffertshofer

Petri Nets with Fuzzy Logic (PNFL): Reverse Engineering and Parametrization

Robert Küffner, Tobias Petri, Lukas Windhager, Ralf Zimmer

Reconstruction of Gene Regulatory Modules in Cancer Cell Cycle by Multi-Source Data Integration

Yuji Zhang, Jianhua Xuan, [ ... ], Habtom W. Ressom

Evidence for Large Complex Networks of Plant Short Silencing RNAs

Daniel MacLean, Nataliya Elina, [ ... ], David C. Baulcombe

A Systems Biology Approach to Transcription Factor Binding Site Prediction

Xiang Zhou, Pavel Sumazin, Presha Rajbhandari, Andrea Califano

Statecharts for Gene Network Modeling

Yong-Jun Shin, Mehrdad Nourani

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