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Network motifs

Induction of an Inflammatory Loop by Interleukin-1β and Tumor Necrosis Factor-α Involves NF-kB and STAT-1 in Differentiated Human Neuroprogenitor Cells

Subbiah Pugazhenthi, Yuji Zhang, Ron Bouchard, Gregory Mahaffey

QuateXelero: An Accelerated Exact Network Motif Detection Algorithm

Sahand Khakabimamaghani, Iman Sharafuddin, [ ... ], Ali Masoudi-Nejad

RMOD: A Tool for Regulatory Motif Detection in Signaling Network

Jinki Kim, Gwan-Su Yi

Probing the Statistical Properties of Unknown Texts: Application to the Voynich Manuscript

Diego R. Amancio, Eduardo G. Altmann, [ ... ], Luciano da F. Costa

Passing Messages between Biological Networks to Refine Predicted Interactions

Kimberly Glass, Curtis Huttenhower, John Quackenbush, Guo-Cheng Yuan

Branched Motifs Enable Long-Range Interactions in Signaling Networks through Retrograde Propagation

Tharmaraj Jesan, Uddipan Sarma, [ ... ], Sitabhra Sinha

Missense Variants of Uncertain Significance (VUS) Altering the Phosphorylation Patterns of BRCA1 and BRCA2

Eric Tram, Sevtap Savas, Hilmi Ozcelik

The Index-Based Subgraph Matching Algorithm (ISMA): Fast Subgraph Enumeration in Large Networks Using Optimized Search Trees

Sofie Demeyer, Tom Michoel, [ ... ], Piet Demeester

Robustness and Backbone Motif of a Cancer Network Regulated by miR-17-92 Cluster during the G1/S Transition

Lijian Yang, Yan Meng, [ ... ], Ya Jia

Human 14-3-3 Paralogs Differences Uncovered by Cross-Talk of Phosphorylation and Lysine Acetylation

Marina Uhart, Diego M. Bustos

NetMODE: Network Motif Detection without Nauty

Xin Li, Rebecca J. Stones, [ ... ], Gang Wang

Design Principles of a Genetic Alarm Clock

Jaroslav Albert, Marianne Rooman

Interactome-Wide Prediction of Protein-Protein Binding Sites Reveals Effects of Protein Sequence Variation in Arabidopsis thaliana

Felipe Leal Valentim, Frank Neven, Peter Boyen, Aalt D. J. van Dijk

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