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Natural language processing

Resource Disambiguator for the Web: Extracting Biomedical Resources and Their Citations from the Scientific Literature

Ibrahim Burak Ozyurt, Jeffrey S. Grethe, Maryann E. Martone, Anita E. Bandrowski

published 05 Jan 2016

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Methods to Develop an Electronic Medical Record Phenotype Algorithm to Compare the Risk of Coronary Artery Disease across 3 Chronic Disease Cohorts

Katherine P. Liao, Ashwin N. Ananthakrishnan, Vishesh Kumar, Zongqi Xia, Andrew Cagan, Vivian S. Gainer, Sergey Goryachev, Pei Chen, Guergana K. Savova, Denis Agniel, Susanne Churchill, Jaeyoung Lee, Shawn N. Murphy, Robert M. Plenge, Peter Szolovits, Isaac Kohane, Stanley Y. Shaw, Elizabeth W. Karlson, Tianxi Cai

published 24 Aug 2015

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Data-Driven Information Extraction from Chinese Electronic Medical Records

Dong Xu, Meizhuo Zhang, Tianwan Zhao, Chen Ge, Weiguo Gao, Jia Wei, Kenny Q. Zhu

published 21 Aug 2015

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Identification of Adverse Drug Events from Free Text Electronic Patient Records and Information in a Large Mental Health Case Register

Ehtesham Iqbal, Robbie Mallah, Richard George Jackson, Michael Ball, Zina M. Ibrahim, Matthew Broadbent, Olubanke Dzahini, Robert Stewart, Caroline Johnston, Richard J. B. Dobson

published 14 Aug 2015

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pGenN, a Gene Normalization Tool for Plant Genes and Proteins in Scientific Literature

Ruoyao Ding, Cecilia N. Arighi, Jung-Youn Lee, Cathy H. Wu, K. Vijay-Shanker

published 10 Aug 2015

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Assessing the Impact of Case Sensitivity and Term Information Gain on Biomedical Concept Recognition

Tudor Groza, Karin Verspoor

published 19 Mar 2015

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Generation of Silver Standard Concept Annotations from Biomedical Texts with Special Relevance to Phenotypes

Anika Oellrich, Nigel Collier, Damian Smedley, Tudor Groza

published 21 Jan 2015

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Using Information from the Electronic Health Record to Improve Measurement of Unemployment in Service Members and Veterans with mTBI and Post-Deployment Stress

Christina Dillahunt-Aspillaga, Dezon Finch, Jill Massengale, Tracy Kretzmer, Stephen L. Luther, James A. McCart

published 26 Dec 2014

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A Machine Reading System for Assembling Synthetic Paleontological Databases

Shanan E. Peters, Ce Zhang, Miron Livny, Christopher Ré

published 01 Dec 2014

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Negation’s Not Solved: Generalizability Versus Optimizability in Clinical Natural Language Processing

Stephen Wu, Timothy Miller, James Masanz, Matt Coarr, Scott Halgrim, David Carrell, Cheryl Clark

published 13 Nov 2014

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Anatomical Entity Recognition with a Hierarchical Framework Augmented by External Resources

Yan Xu, Ji Hua, Zhaoheng Ni, Qinlang Chen, Yubo Fan, Sophia Ananiadou, Eric I-Chao Chang, Junichi Tsujii

published 24 Oct 2014

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ClinicalTrials.gov as a Data Source for Semi-Automated Point-Of-Care Trial Eligibility Screening

Pascal B. Pfiffner, JiWon Oh, Timothy A. Miller, Kenneth D. Mandl

published 21 Oct 2014

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Facilitating Surveillance of Pulmonary Invasive Mold Diseases in Patients with Haematological Malignancies by Screening Computed Tomography Reports Using Natural Language Processing

Michelle R. Ananda-Rajah, David Martinez, Monica A. Slavin, Lawrence Cavedon, Michael Dooley, Allen Cheng, Karin A. Thursky

published 24 Sep 2014

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