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Natural language processing

Learning to Recognize Phenotype Candidates in the Auto-Immune Literature Using SVM Re-Ranking

Nigel Collier, Mai-vu Tran, Hoang-quynh Le, Quang-Thuy Ha, Anika Oellrich, Dietrich Rebholz-Schuhmann

published 14 Oct 2013

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Metaphor Interpretation Using Paraphrases Extracted from the Web

Danushka Bollegala, Ekaterina Shutova

published 20 Sep 2013

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Feasibility of Using Clinical Element Models (CEM) to Standardize Phenotype Variables in the Database of Genotypes and Phenotypes (dbGaP)

Ko-Wei Lin, Melissa Tharp, Mike Conway, Alexander Hsieh, Mindy Ross, Jihoon Kim, Hyeon-Eui Kim

published 18 Sep 2013

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Evaluation of Smoking Status Identification Using Electronic Health Records and Open-Text Information in a Large Mental Health Case Register

Chia-Yi Wu, Chin-Kuo Chang, Debbie Robson, Richard Jackson, Shaw-Ji Chen, Richard D. Hayes, Robert Stewart

published 12 Sep 2013

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Has Large-Scale Named-Entity Network Analysis Been Resting on a Flawed Assumption?

Brent D. Fegley, Vetle I. Torvik

published 24 Jul 2013

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The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text

Evangelos Pafilis, Sune P. Frankild, Lucia Fanini, Sarah Faulwetter, Christina Pavloudi, Aikaterini Vasileiadou, Christos Arvanitidis, Lars Juhl Jensen

published 18 Jun 2013

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Enhancement of Chemical Entity Identification in Text Using Semantic Similarity Validation

Tiago Grego, Francisco M. Couto

published 02 May 2013

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Phylomemetic Patterns in Science Evolution—The Rise and Fall of Scientific Fields

David Chavalarias, Jean-Philippe Cointet

published 11 Feb 2013

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Signalling Network Construction for Modelling Plant Defence Response

Dragana Miljkovic, Tjaša Stare, Igor Mozetič, Vid Podpečan, Marko Petek, Kamil Witek, Marina Dermastia, Nada Lavrač, Kristina Gruden

published 18 Dec 2012

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Integrating Various Resources for Gene Name Normalization

Yuncui Hu, Yanpeng Li, Hongfei Lin, Zhihao Yang, Liangxi Cheng

published 12 Sep 2012

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Combined SVM-CRFs for Biological Named Entity Recognition with Maximal Bidirectional Squeezing

Fei Zhu, Bairong Shen

published 26 Jun 2012

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Using Workflows to Explore and Optimise Named Entity Recognition for Chemistry

BalaKrishna Kolluru, Lezan Hawizy, Peter Murray-Rust, Junichi Tsujii, Sophia Ananiadou

published 25 May 2011

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Named Entity Recognition for Bacterial Type IV Secretion Systems

Sophia Ananiadou, Dan Sullivan, William Black, Gina-Anne Levow, Joseph J. Gillespie, Chunhong Mao, Sampo Pyysalo, BalaKrishna Kolluru, Junichi Tsujii, Bruno Sobral

published 29 Mar 2011

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