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Nanopore sequencing

Molecular diagnosis of patients with hepatitis A virus infection using amplicon-based nanopore sequencing

Geum-Young Lee, Kyungmin Park, Young-Sun Lee, Ji Hoon Kim, Kwan Soo Byun, Jongwoo Kim, Won-Keun Kim, Jin-Won Song

published 12 Jul 2023

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Nanopore sequencing data analysis using Microsoft Azure cloud computing service

Linh Truong, Felipe Ayora, Lloyd D’Orsogna, Patricia Martinez, Dianne De Santis

published 02 Dec 2022

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Chimeric DNA byproducts in strand displacement amplification using the T7 replisome

Dillon B. Nye, Nathan A. Tanner

published 19 Sep 2022

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MAECI: A pipeline for generating consensus sequence with nanopore sequencing long-read assembly and error correction

Jidong Lang

published 20 May 2022

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Genotyping of familial Mediterranean fever gene (MEFV)—Single nucleotide polymorphism—Comparison of Nanopore with conventional Sanger sequencing

Jonas Schmidt, Sandro Berghaus, Frithjof Blessing, Holger Herbeck, Josef Blessing, Peter Schierack, Stefan Rödiger, Dirk Roggenbuck, Folker Wenzel

published 17 Mar 2022

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Development of an efficient antimicrobial susceptibility testing method with species identification by Nanopore sequencing of 16S rRNA amplicons

Yuto Kawai, Naoya Ozawa, Takako Fukuda, Noriyuki Suzuki, Kazuki Mikata

published 03 Feb 2022

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Single gene targeted nanopore sequencing enables simultaneous identification and antimicrobial resistance detection of sexually transmitted infections

Liqing Zhou, Andrea Lopez Rodas, Luz Marina Llangarí, Natalia Romero Sandoval, Philip Cooper, Syed Tariq Sadiq

published 21 Jan 2022

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Whole-genome based strain identification of fowlpox virus directly from cutaneous tissue and propagated virus

Kinza Asif, Denise O’Rourke, Alistair R. Legione, Pollob Shil, Marc S. Marenda, Amir H. Noormohammadi

published 16 Dec 2021

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Nanopore sequencing of SARS-CoV-2: Comparison of short and long PCR-tiling amplicon protocols

Broňa Brejová, Kristína Boršová, Viktória Hodorová, Viktória Čabanová, Askar Gafurov, Dominika Fričová, Martina Neboháčová, Tomáš Vinař, Boris Klempa, Jozef Nosek

published 29 Oct 2021

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A CRISPR-based assay for the study of eukaryotic DNA repair onboard the International Space Station

Sarah Stahl-Rommel, David Li, Michelle Sung, Rebecca Li, Aarthi Vijayakumar, Kutay Deniz Atabay, G. Guy Bushkin, Christian L. Castro, Kevin D. Foley, D. Scott Copeland, Sarah L. Castro-Wallace, Ezequiel Alvarez Saavedra, Emily J. Gleason, Sebastian Kraves

published 30 Jun 2021

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Precision long-read metagenomics sequencing for food safety by detection and assembly of Shiga toxin-producing Escherichia coli in irrigation water

Meghan Maguire, Julie A. Kase, Dwayne Roberson, Tim Muruvanda, Eric W. Brown, Marc Allard, Steven M. Musser, Narjol González-Escalona

published 14 Jan 2021

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Molecular investigations on a chimeric strain of Staphylococcus aureus sequence type 80

Darius Gawlik, Antje Ruppelt-Lorz, Elke Müller, Annett Reißig, Helmut Hotzel, Sascha D. Braun, Bo Söderquist, Albrecht Ziegler-Cordts, Claudia Stein, Mathias W. Pletz, Ralf Ehricht, Stefan Monecke

published 14 Oct 2020

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Can we use it? On the utility of de novo and reference-based assembly of Nanopore data for plant plastome sequencing

Agnes Scheunert, Marco Dorfner, Thomas Lingl, Christoph Oberprieler

published 24 Mar 2020

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