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Mutation detection

Spread of endemic SARS-CoV-2 lineages in Russia before April 2021

Galya V. Klink, Ksenia R. Safina, Sofya K. Garushyants, Mikhail Moldovan, Elena Nabieva, Andrey B. Komissarov, Dmitry Lioznov, Georgii A. Bazykin, The CoRGI (Coronavirus Russian Genetic Initiative) Consortium

published 20 Jul 2022

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Evaluation of a commercial SARS-CoV-2 multiplex PCR genotyping assay for variant identification in resource-scarce settings

Chijioke N. Umunnakwe, Zinhle N. Makatini, Mathapelo Maphanga, Anele Mdunyelwa, Khamusi M. Mlambo, Puseletso Manyaka, Monique Nijhuis, Annemarie Wensing, Hugo A. Tempelman

published 24 Jun 2022

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High prevalence of an alpha variant lineage with a premature stop codon in ORF7a in Iraq, winter 2020–2021

Nihad A. M. Al-Rashedi, Hussein Alburkat, Abas O. Hadi, Murad G. Munahi, Ali Jasim, Alaa Hameed, Basel Saber Oda, Kareem Moamin Lilo, Laith A. H. AlObaidi, Olli Vapalahti, Tarja Sironen, Teemu Smura

published 26 May 2022

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Analysis of temporal changes in HIV-1 CRF01_AE gag genetic variability and CD8 T-cell epitope evolution

Wardah Rafaqat, Uroosa Tariq, Nida Farooqui, Maheen Zaidi, Aanish Raees, Maaz Zuberi, Amna Batool, Syed Hani Abidi

published 10 May 2022

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Direct assessment of possible mutations in the 23S rRNA gene encoding macrolide resistance in Chlamydia trachomatis

J. M. van Niekerk, I. H. M. van Loo, M. Lucchesi, S. A. Morré, C. J. P. A. Hoebe, N. H. T. M. Dukers-Muijrers, P. F. G. Wolffs

published 10 May 2022

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The efficacy of T790M mutation testing in liquid biopsy—Real clinic data

Paweł Krawczyk, Luiza Grzycka-Kowalczyk, Justyna Błach, Katarzyna Reszka, Izabela Chmielewska, Robert Kieszko, Magdalena Wójcik-Superczyńska, Michał Szczyrek, Tomasz Jankowski, Janusz Milanowski

published 06 May 2022

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Efficacy of liquid biopsy for disease monitoring and early prediction of tumor progression in EGFR mutation-positive non-small cell lung cancer

Hsiang-Ling Ho, Yuqiu Jiang, Chi-Lu Chiang, Sylwia Karwowska, Ranga Yerram, Keerti Sharma, Sidney Scudder, Chao-Hua Chiu, Chun-Ming Tsai, John F. Palma, Abha Sharma, Teh-Ying Chou

published 28 Apr 2022

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Non-canonical genomic driver mutations of urethane carcinogenesis

Siqi Li, Christopher M. Counter

published 28 Apr 2022

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Direct comparison of circulating tumor DNA sequencing assays with targeted large gene panels

Lizhi Yu, Gonzalo Lopez, John Rassa, Yixin Wang, Tara Basavanhally, Andrew Browne, Chang-Pin Huang, Lauren Dorsey, Jin Jen, Sarah Hersey

published 28 Apr 2022

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Integrative diagnosis of primary cutaneous large B-cell lymphomas supports the relevance of cell of origin profiling

Audrey Gros, Sarah Menguy, Victor Bobée, Océane Ducharme, Isabelle Cirilo Cassaigne, Béatrice Vergier, Marie Parrens, Marie Beylot-Barry, Anne Pham-Ledard, Philippe Ruminy, Fabrice Jardin, Jean-Philippe Merlio

published 22 Apr 2022

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Development and evaluation of ActSeq: A targeted next-generation sequencing panel for clinical oncology use

Zonggao Shi, Jacqueline Lopez, William Kalliney, Bobbie Sutton, Joyce Simpson, Kevin Maggert, Sheng Liu, Jun Wan, M. Sharon Stack

published 21 Apr 2022

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Wastewater surveillance of SARS-CoV-2 mutational profiles at a university and its surrounding community reveals a 20G outbreak on campus

Candice L. Swift, Mirza Isanovic, Karlen E. Correa Velez, Sarah C. Sellers, R. Sean Norman

published 14 Apr 2022

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Mutations in the HBV PreS/S gene related to hepatocellular carcinoma in Vietnamese chronic HBV-infected patients

Nguyen Thi Cam Huong, Nguyen Quang Trung, Bac An Luong, Duong Bich Tram, Hoang Anh Vu, Hoang Huu Bui, Hoa Pham Thi Le

published 07 Apr 2022

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