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Multiple alignment calculation

Sequencing DNA with nanopores: Troubles and biases

Clara Delahaye, Jacques Nicolas

published 01 Oct 2021

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Exogene: A performant workflow for detecting viral integrations from paired-end next-generation sequencing data

Zachary Stephens, Daniel O’Brien, Mrunal Dehankar, Lewis R. Roberts, Ravishankar K. Iyer, Jean-Pierre Kocher

published 22 Sep 2021

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The plastome sequence of Bactris gasipaes and evolutionary analysis in tribe Cocoseae (Arecaceae)

Raquel Santos da Silva, Charles Roland Clement, Eduardo Balsanelli, Valter Antonio de Baura, Emanuel Maltempi de Souza, Hugo Pacheco de Freitas Fraga, Leila do Nascimento Vieira

published 24 Aug 2021

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Evolution and origin of sliding clamp in bacteria, archaea and eukarya

Sandesh Acharya, Amol Dahal, Hitesh Kumar Bhattarai

published 11 Aug 2021

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The role of internal transcribed spacer 2 secondary structures in classifying mycoparasitic Ampelomyces

Rosa E. Prahl, Shahjahan Khan, Ravinesh C. Deo

published 30 Jun 2021

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CaBagE: A Cas9-based Background Elimination strategy for targeted, long-read DNA sequencing

Amelia D. Wallace, Thomas A. Sasani, Jordan Swanier, Brooke L. Gates, Jeff Greenland, Brent S. Pedersen, Katherine E. Varley, Aaron R. Quinlan

published 08 Apr 2021

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Extra base hits: Widespread empirical support for instantaneous multiple-nucleotide changes

Alexander G. Lucaci, Sadie R. Wisotsky, Stephen D. Shank, Steven Weaver, Sergei L. Kosakovsky Pond

published 12 Mar 2021

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Carbon fixation and rhodopsin systems in microbial mats from hypersaline lakes Brava and Tebenquiche, Salar de Atacama, Chile

Daniel Kurth, Dario Elias, María Cecilia Rasuk, Manuel Contreras, María Eugenia Farías

published 09 Feb 2021

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A universal RT-qPCR assay for “One Health” detection of influenza A viruses

Alexander Nagy, Lenka Černíková, Kateřina Kunteová, Zuzana Dirbáková, Saumya S. Thomas, Marek J. Slomka, Ádám Dán, Tünde Varga, Martina Máté, Helena Jiřincová, Ian H. Brown

published 20 Jan 2021

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rfaRm: An R client-side interface to facilitate the analysis of the Rfam database of RNA families

Lara Sellés Vidal, Rafael Ayala, Guy-Bart Stan, Rodrigo Ledesma-Amaro

published 15 Jan 2021

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Alignment-free method for functional annotation of amino acid substitutions: Application on epigenetic factors involved in hematologic malignancies

Branislava Gemović, Vladimir Perović, Radoslav Davidović, Tamara Drljača, Nevena Veljkovic

published 04 Jan 2021

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A workflow with R: Phylogenetic analyses and visualizations using mitochondrial cytochrome b gene sequences

Emine Toparslan, Kemal Karabag, Ugur Bilge

published 15 Dec 2020

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Mutational networks of escape from transmitted HIV-1 infection

Elma H. Akand, Stephen J. Maher, John M. Murray

published 07 Dec 2020

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