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Multiple alignment calculation

RAxML and FastTree: Comparing Two Methods for Large-Scale Maximum Likelihood Phylogeny Estimation

Kevin Liu, C. Randal Linder, Tandy Warnow

published 21 Nov 2011

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Phylogenetic and Complementation Analysis of a Single-Stranded DNA Binding Protein Family from Lactococcal Phages Indicates a Non-Bacterial Origin

Agnieszka K. Szczepankowska, Eric Prestel, Mahendra Mariadassou, Jacek K. Bardowski, Elena Bidnenko

published 04 Nov 2011

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An Alignment-Free Approach for Eukaryotic ITS2 Annotation and Phylogenetic Inference

Guillermin Agüero-Chapin, Aminael Sánchez-Rodríguez, Pedro I. Hidalgo-Yanes, Yunierkis Pérez-Castillo, Reinaldo Molina-Ruiz, Kathleen Marchal, Vítor Vasconcelos, Agostinho Antunes

published 26 Oct 2011

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Identification of a Conserved Anti-Apoptotic Protein That Modulates the Mitochondrial Apoptosis Pathway

Yu Zhang, Elisabet Johansson, Marian L. Miller, Reiner U. Jänicke, Donald J. Ferguson, David Plas, Jarek Meller, Marshall W. Anderson

published 30 Sep 2011

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An α/β Hydrolase and Associated Per-ARNT-Sim Domain Comprise a Bipartite Sensing Module Coupled with Diverse Output Domains

Eugene V. Nadezhdin, Margaret S. Brody, Chester W. Price

published 29 Sep 2011

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MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

Vincent Ranwez, Sébastien Harispe, Frédéric Delsuc, Emmanuel J. P. Douzery

published 16 Sep 2011

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Transcription Factor Binding Site Positioning in Yeast: Proximal Promoter Motifs Characterize TATA-Less Promoters

Ionas Erb, Erik van Nimwegen

published 09 Sep 2011

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Comprehensively Surveying Structure and Function of RING Domains from Drosophila melanogaster

Muying Ying, Xiaotian Huang, Haijun Zhao, Yuehao Wu, Fusheng Wan, Chunhong Huang, Kemin Jie

published 02 Sep 2011

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Transcriptome Sequencing of the Blind Subterranean Mole Rat, Spalax galili: Utility and Potential for the Discovery of Novel Evolutionary Patterns

Assaf Malik, Abraham Korol, Sariel Hübner, Alvaro G. Hernandez, Jyothi Thimmapuram, Shahjahan Ali, Fabian Glaser, Arnon Paz, Aaron Avivi, Mark Band

published 12 Aug 2011

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Study on Phylogenetic Relationships, Variability, and Correlated Mutations in M2 Proteins of Influenza Virus A

Ly Le, Jacek Leluk

published 02 Aug 2011

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Identification and Characterization of NF-Y Transcription Factor Families in the Monocot Model Plant Brachypodium distachyon

Shuanghe Cao, Roderick W. Kumimoto, Chamindika L. Siriwardana, Jan R. Risinger, Ben F. Holt III

published 30 Jun 2011

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Improved Phylogenetic Analyses Corroborate a Plausible Position of Martialis heureka in the Ant Tree of Life

Patrick Kück, Francisco Hita Garcia, Bernhard Misof, Karen Meusemann

published 24 Jun 2011

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Markov Models of Amino Acid Substitution to Study Proteins with Intrinsically Disordered Regions

Adam M. Szalkowski, Maria Anisimova

published 27 May 2011

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