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Multiple alignment calculation

An α/β Hydrolase and Associated Per-ARNT-Sim Domain Comprise a Bipartite Sensing Module Coupled with Diverse Output Domains

Eugene V. Nadezhdin, Margaret S. Brody, Chester W. Price

published 29 Sep 2011

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MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

Vincent Ranwez, Sébastien Harispe, Frédéric Delsuc, Emmanuel J. P. Douzery

published 16 Sep 2011

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Transcription Factor Binding Site Positioning in Yeast: Proximal Promoter Motifs Characterize TATA-Less Promoters

Ionas Erb, Erik van Nimwegen

published 09 Sep 2011

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Comprehensively Surveying Structure and Function of RING Domains from Drosophila melanogaster

Muying Ying, Xiaotian Huang, Haijun Zhao, Yuehao Wu, Fusheng Wan, Chunhong Huang, Kemin Jie

published 02 Sep 2011

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Transcriptome Sequencing of the Blind Subterranean Mole Rat, Spalax galili: Utility and Potential for the Discovery of Novel Evolutionary Patterns

Assaf Malik, Abraham Korol, Sariel Hübner, Alvaro G. Hernandez, Jyothi Thimmapuram, Shahjahan Ali, Fabian Glaser, Arnon Paz, Aaron Avivi, Mark Band

published 12 Aug 2011

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Study on Phylogenetic Relationships, Variability, and Correlated Mutations in M2 Proteins of Influenza Virus A

Ly Le, Jacek Leluk

published 02 Aug 2011

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Identification and Characterization of NF-Y Transcription Factor Families in the Monocot Model Plant Brachypodium distachyon

Shuanghe Cao, Roderick W. Kumimoto, Chamindika L. Siriwardana, Jan R. Risinger, Ben F. Holt III

published 30 Jun 2011

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Improved Phylogenetic Analyses Corroborate a Plausible Position of Martialis heureka in the Ant Tree of Life

Patrick Kück, Francisco Hita Garcia, Bernhard Misof, Karen Meusemann

published 24 Jun 2011

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Markov Models of Amino Acid Substitution to Study Proteins with Intrinsically Disordered Regions

Adam M. Szalkowski, Maria Anisimova

published 27 May 2011

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Host-Pathogen O-Methyltransferase Similarity and Its Specific Presence in Highly Virulent Strains of Francisella tularensis Suggests Molecular Mimicry

Mia D. Champion

published 26 May 2011

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A Bioinformatics Approach to the Structure, Function, and Evolution of the Nucleoprotein of the Order Mononegavirales

Sean B. Cleveland, John Davies, Marcella A. McClure

published 03 May 2011

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jMOTU and Taxonerator: Turning DNA Barcode Sequences into Annotated Operational Taxonomic Units

Martin Jones, Anisah Ghoorah, Mark Blaxter

published 25 Apr 2011

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Tasting Soil Fungal Diversity with Earth Tongues: Phylogenetic Test of SATé Alignments for Environmental ITS Data

Zheng Wang, R. Henrik Nilsson, Francesc Lopez-Giraldez, Wen-ying Zhuang, Yu-cheng Dai, Peter R. Johnston, Jeffrey P. Townsend

published 21 Apr 2011

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