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Multiple alignment calculation

Classification of the Adenylation and Acyl-Transferase Activity of NRPS and PKS Systems Using Ensembles of Substrate Specific Hidden Markov Models

Barzan I. Khayatt, Lex Overmars, Roland J. Siezen, Christof Francke

Interferon-Lambda3 (IFN-λ3) and Its Cognate Receptor Subunits in Tree Shrews (Tupaia belangeri): Genomic Sequence Retrieval, Molecular Identification and Expression Analysis

Ming-Li Li, Wen-Wen Xu, [ ... ], Hua-Tang Zhang

Comparative Studies of Copy Number Variation Detection Methods for Next-Generation Sequencing Technologies

Junbo Duan, Ji-Gang Zhang, Hong-Wen Deng, Yu-Ping Wang

A Small Set of Succinct Signature Patterns Distinguishes Chinese and Non-Chinese HIV-1 Genomes

Yan Wang, Reda Rawi, [ ... ], Daniel Hoffmann

DendroBLAST: Approximate Phylogenetic Trees in the Absence of Multiple Sequence Alignments

Steven Kelly, Philip K. Maini

The Evolution and Diversity of SALMFamide Neuropeptides

Maurice R. Elphick, Sufyan Achhala, Natalia Martynyuk

Alignment of Helical Membrane Protein Sequences Using AlignMe

Marcus Stamm, René Staritzbichler, Kamil Khafizov, Lucy R. Forrest

Towards Improved Quality of GPCR Models by Usage of Multiple Templates and Profile-Profile Comparison

Dorota Latek, Pawel Pasznik, Teresa Carlomagno, Slawomir Filipek

Assessing DNA Barcoding as a Tool for Species Identification and Data Quality Control

Yong-Yi Shen, Xiao Chen, Robert W. Murphy

Increasing Sequence Search Sensitivity with Transitive Alignments

Ketil Malde, Tomasz Furmanek

Iteratively Refined Guide Trees Help Improving Alignment and Phylogenetic Inference in the Mushroom Family Bolbitiaceae

Annamária Tóth, Anton Hausknecht, [ ... ], László G. Nagy

Correlated Evolution of Positions within Mammalian cis Elements

Rithun Mukherjee, Perry Evans, Larry N. Singh, Sridhar Hannenhalli

Fungi in Thailand: A Case Study of the Efficacy of an ITS Barcode for Automatically Identifying Species within the Annulohypoxylon and Hypoxylon Genera

Nuttika Suwannasai, María P. Martín, [ ... ], John L. Spouge

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