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Multiple alignment calculation

MC64-ClustalWP2: A Highly-Parallel Hybrid Strategy to Align Multiple Sequences in Many-Core Architectures

David Díaz, Francisco J. Esteban, Pilar Hernández, Juan Antonio Caballero, Antonio Guevara, Gabriel Dorado, Sergio Gálvez

published 07 Apr 2014

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Fast and Accurate Multivariate Gaussian Modeling of Protein Families: Predicting Residue Contacts and Protein-Interaction Partners

Carlo Baldassi, Marco Zamparo, Christoph Feinauer, Andrea Procaccini, Riccardo Zecchina, Martin Weigt, Andrea Pagnani

published 24 Mar 2014

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Where Taxonomy Based on Subtle Morphological Differences Is Perfectly Mirrored by Huge Genetic Distances: DNA Barcoding in Protura (Hexapoda)

Monika Carol Resch, Julia Shrubovych, Daniela Bartel, Nikolaus U. Szucsich, Gerald Timelthaler, Yun Bu, Manfred Walzl, Günther Pass

published 07 Mar 2014

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MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping

Wan-Ping Lee, Michael P. Stromberg, Alistair Ward, Chip Stewart, Erik P. Garrison, Gabor T. Marth

published 05 Mar 2014

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Evolution and Structural Organization of the C Proteins of Paramyxovirinae

Michael K. Lo, Teit Max Søgaard, David G. Karlin

published 25 Feb 2014

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QuickProbs—A Fast Multiple Sequence Alignment Algorithm Designed for Graphics Processors

Adam Gudyś, Sebastian Deorowicz

published 25 Feb 2014

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A Deterministic Analysis of Genome Integrity during Neoplastic Growth in Drosophila

Cem Sievers, Federico Comoglio, Makiko Seimiya, Gunter Merdes, Renato Paro

published 06 Feb 2014

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The Receptor for Advanced Glycation End-Products (RAGE) Is Only Present in Mammals, and Belongs to a Family of Cell Adhesion Molecules (CAMs)

Luca Sessa, Elena Gatti, Filippo Zeni, Antonella Antonelli, Alessandro Catucci, Michael Koch, Giulio Pompilio, Günter Fritz, Angela Raucci, Marco E. Bianchi

published 27 Jan 2014

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CUSHAW3: Sensitive and Accurate Base-Space and Color-Space Short-Read Alignment with Hybrid Seeding

Yongchao Liu, Bernt Popp, Bertil Schmidt

published 22 Jan 2014

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Bioinformatics Analysis of Bacterial Annexins – Putative Ancestral Relatives of Eukaryotic Annexins

Praveen Kumar Kodavali, Małgorzata Dudkiewicz, Sławomir Pikuła, Krzysztof Pawłowski

published 16 Jan 2014

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Prediction of Detailed Enzyme Functions and Identification of Specificity Determining Residues by Random Forests

Chioko Nagao, Nozomi Nagano, Kenji Mizuguchi

published 08 Jan 2014

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Multiple Co-Evolutionary Networks Are Supported by the Common Tertiary Scaffold of the LacI/GalR Proteins

Daniel J. Parente, Liskin Swint-Kruse

published 31 Dec 2013

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Generalized Baum-Welch Algorithm Based on the Similarity between Sequences

Vahid Rezaei, Hamid Pezeshk, Horacio Pérez-Sa'nchez

published 20 Dec 2013

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