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Multiple alignment calculation

Design Pattern Mining Using Distributed Learning Automata and DNA Sequence Alignment

Mansour Esmaeilpour, Vahideh Naderifar, Zarina Shukur

published 22 Sep 2014

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Recombination Pattern Reanalysis of Some HIV-1 Circulating Recombination Forms Suggest the Necessity and Difficulty of Revision

Lei Jia, Lin Li, Hanping Li, Siyang Liu, Xiaolin Wang, Zuoyi Bao, Tianyi Li, Daomin Zhuang, Yongjian Liu, Jingyun Li

published 09 Sep 2014

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Comparative Analysis of Functional Metagenomic Annotation and the Mappability of Short Reads

Rogan Carr, Elhanan Borenstein

published 22 Aug 2014

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Profile Hidden Markov Models for the Detection of Viruses within Metagenomic Sequence Data

Peter Skewes-Cox, Thomas J. Sharpton, Katherine S. Pollard, Joseph L. DeRisi

published 20 Aug 2014

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Molecular Dynamics Study of Binding of µ-Conotoxin GIIIA to the Voltage-Gated Sodium Channel Na_v1.4

Somayeh Mahdavi, Serdar Kuyucak

published 18 Aug 2014

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Characterization of Hepatitis C Virus Genotypes by Direct Sequencing of HCV 5′UTR Region of Isolates from Saudi Arabia

Medhat K. Shier, Mohammad S. El-Wetidy, Hebatallah H. Ali, Mohammad M. Al-Qattan

published 06 Aug 2014

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JAGuaR: Junction Alignments to Genome for RNA-Seq Reads

Yaron S. Butterfield, Maayan Kreitzman, Nina Thiessen, Richard D. Corbett, Yisu Li, Johnson Pang, Yussanne P. Ma, Steven J. M. Jones, İnanç Birol

published 25 Jul 2014

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Some Limitations of Public Sequence Data for Phylogenetic Inference (in Plants)

Cody E. Hinchliff, Stephen Andrew Smith

published 07 Jul 2014

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Systematic Characterization and Comparative Analysis of the Rabbit Immunoglobulin Repertoire

Jason J. Lavinder, Kam Hon Hoi, Sai T. Reddy, Yariv Wine, George Georgiou

published 30 Jun 2014

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GASOLINE: a Greedy And Stochastic algorithm for Optimal Local multiple alignment of Interaction NEtworks

Giovanni Micale, Alfredo Pulvirenti, Rosalba Giugno, Alfredo Ferro

published 09 Jun 2014

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Identification of Divergent Protein Domains by Combining HMM-HMM Comparisons and Co-Occurrence Detection

Amel Ghouila, Isabelle Florent, Fatma Zahra Guerfali, Nicolas Terrapon, Dhafer Laouini, Sadok Ben Yahia, Olivier Gascuel, Laurent Bréhélin

published 05 Jun 2014

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RNAbrowse: RNA-Seq De Novo Assembly Results Browser

Jérôme Mariette, Céline Noirot, Ibounyamine Nabihoudine, Philippe Bardou, Claire Hoede, Anis Djari, Cédric Cabau, Christophe Klopp

published 13 May 2014

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Redefining the PF06864 Pfam Family Based on Burkholderia pseudomallei PilO2_Bp S-SAD Crystal Structure

Patricia Lassaux, Oscar Conchillo-Solé, Babu A. Manjasetty, Daniel Yero, Lucia Perletti, Hassan Belrhali, Xavier Daura, Louise J. Gourlay, Martino Bolognesi

published 11 Apr 2014

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