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Multiple alignment calculation

Prediction of Protein Structural Features from Sequence Data Based on Shannon Entropy and Kolmogorov Complexity

Robert Paul Bywater

published 09 Apr 2015

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MAFCO: A Compression Tool for MAF Files

Luís M. O. Matos, António J. R. Neves, Diogo Pratas, Armando J. Pinho

published 27 Mar 2015

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Mo-CBP₃, an Antifungal Chitin-Binding Protein from Moringa oleifera Seeds, Is a Member of the 2S Albumin Family

José E. C. Freire, Ilka M. Vasconcelos, Frederico B. M. B. Moreno, Adelina B. Batista, Marina D. P. Lobo, Mirella L. Pereira, João P. M. S. Lima, Ricardo V. M. Almeida, Antônio J. S. Sousa, Ana C. O. Monteiro-Moreira, José T. A. Oliveira, Thalles B. Grangeiro

published 19 Mar 2015

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Entropy-Based Model for MiRNA Isoform Analysis

Shengqin Wang, Jing Tu, Lei Wang, Zuhong Lu

published 18 Mar 2015

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Reasoning over Taxonomic Change: Exploring Alignments for the Perelleschus Use Case

Nico M. Franz, Mingmin Chen, Shizhuo Yu, Parisa Kianmajd, Shawn Bowers, Bertram Ludäscher

published 20 Feb 2015

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A Toolkit for ARB to Integrate Custom Databases and Externally Built Phylogenies

Steven D. Essinger, Erin Reichenberger, Calvin Morrison, Christopher B. Blackwood, Gail L. Rosen

published 21 Jan 2015

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Div-BLAST: Diversification of Sequence Search Results

Elif Eser, Tolga Can, Hakan Ferhatosmanoğlu

published 22 Dec 2014

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IM-TORNADO: A Tool for Comparison of 16S Reads from Paired-End Libraries

Patricio Jeraldo, Krishna Kalari, Xianfeng Chen, Jaysheel Bhavsar, Ashutosh Mangalam, Bryan White, Heidi Nelson, Jean-Pierre Kocher, Nicholas Chia

published 15 Dec 2014

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Genomic Signal Processing Methods for Computation of Alignment-Free Distances from DNA Sequences

Ernesto Borrayo, E. Gerardo Mendizabal-Ruiz, Hugo Vélez-Pérez, Rebeca Romo-Vázquez, Adriana P. Mendizabal, J. Alejandro Morales

published 13 Nov 2014

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The Dawn of Open Access to Phylogenetic Data

Andrew F. Magee, Michael R. May, Brian R. Moore

published 24 Oct 2014

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Combining Physicochemical and Evolutionary Information for Protein Contact Prediction

Michael Schneider, Oliver Brock

published 22 Oct 2014

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Whole Genome Complete Resequencing of Bacillus subtilis Natto by Combining Long Reads with High-Quality Short Reads

Mayumi Kamada, Sumitaka Hase, Kengo Sato, Atsushi Toyoda, Asao Fujiyama, Yasubumi Sakakibara

published 16 Oct 2014

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SDT: A Virus Classification Tool Based on Pairwise Sequence Alignment and Identity Calculation

Brejnev Muhizi Muhire, Arvind Varsani, Darren Patrick Martin

published 26 Sep 2014

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