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Morphogenic segmentation

A fully-automated, robust, and versatile algorithm for long-term budding yeast segmentation and tracking

N. Ezgi Wood, Andreas Doncic

published 27 Mar 2019

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Automatic microarray image segmentation with clustering-based algorithms

Guifang Shao, Dongyao Li, Junfa Zhang, Jianbo Yang, Yali Shangguan

published 22 Jan 2019

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Simplified, automated methods for assessing pixel intensities of fluorescently-tagged drugs in cells

Allan Kachelmeier, Tsering Shola, William B. Meier, Anastasiya Johnson, Meiyan Jiang, Peter S. Steyger

published 01 Nov 2018

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iCopyDAV: Integrated platform for copy number variations—Detection, annotation and visualization

Prashanthi Dharanipragada, Sriharsha Vogeti, Nita Parekh

published 05 Apr 2018

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Automated C. elegans embryo alignments reveal brain neuropil position invariance despite lax cell body placement

Peter Insley, Shai Shaham

published 28 Mar 2018

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Contribution of cell proliferation to axial elongation in the red flour beetle Tribolium castaneum

Rodrigo E. Cepeda, Renato V. Pardo, Constanza C. Macaya, Andres F. Sarrazin

published 09 Oct 2017

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Application of the 3D slicer chest imaging platform segmentation algorithm for large lung nodule delineation

Stephen S. F. Yip, Chintan Parmar, Daniel Blezek, Raul San Jose Estepar, Steve Pieper, John Kim, Hugo J. W. L. Aerts

published 08 Jun 2017

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Accurate Detection of Dysmorphic Nuclei Using Dynamic Programming and Supervised Classification

Marlies Verschuuren, Jonas De Vylder, Hannes Catrysse, Joke Robijns, Wilfried Philips, Winnok H. De Vos

published 26 Jan 2017

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Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN

Benedikt Zacher, Margaux Michel, Björn Schwalb, Patrick Cramer, Achim Tresch, Julien Gagneur

published 05 Jan 2017

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Osmotic and Heat Stress Effects on Segmentation

Julian Weiss, Stephen H. Devoto

published 22 Dec 2016

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Object Segmentation and Ground Truth in 3D Embryonic Imaging

Bhavna Rajasekaran, Koichiro Uriu, Guillaume Valentin, Jean-Yves Tinevez, Andrew C. Oates

published 22 Jun 2016

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Robust Machine Learning-Based Correction on Automatic Segmentation of the Cerebellum and Brainstem

Jun Yi Wang, Michael M. Ngo, David Hessl, Randi J. Hagerman, Susan M. Rivera

published 23 May 2016

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A Meta-Analysis of Retinoblastoma Copy Numbers Refines the List of Possible Driver Genes Involved in Tumor Progression

Irsan E. Kooi, Berber M. Mol, Maarten P. G. Massink, Marcus C. de Jong, Pim de Graaf, Paul van der Valk, Hanne Meijers-Heijboer, Gertjan J. L. Kaspers, Annette C. Moll, Hein te Riele, Jacqueline Cloos, Josephine C. Dorsman

published 26 Apr 2016

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