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Morphogenic segmentation

Small hand-designed convolutional neural networks outperform transfer learning in automated cell shape detection in confluent tissues

Louis Combe, Mélina Durande, Hélène Delanoë-Ayari, Olivier Cochet-Escartin

published 16 Feb 2023

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Detection and measurement of butterfly eyespot and spot patterns using convolutional neural networks

Carolina Cunha, Hemaxi Narotamo, Antónia Monteiro, Margarida Silveira

published 13 Feb 2023

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microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation

Tim Scherr, Johannes Seiffarth, Bastian Wollenhaupt, Oliver Neumann, Marcel P. Schilling, Dietrich Kohlheyer, Hanno Scharr, Katharina Nöh, Ralf Mikut

published 29 Nov 2022

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PreciseEdge raster RGB image segmentation algorithm reduces user input for livestock digital body measurements highly correlated to real-world measurements

M. Jennifer Woodward-Greene, Jason M. Kinser, Tad S. Sonstegard, Johann Sölkner, Iosif I. Vaisman, Curtis P. Van Tassell

published 13 Oct 2022

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LiveCellMiner: A new tool to analyze mitotic progression

Daniel Moreno-Andrés, Anuk Bhattacharyya, Anja Scheufen, Johannes Stegmaier

published 07 Jul 2022

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Image-based cell profiling enhancement via data cleaning methods

Arghavan Rezvani, Mahtab Bigverdi, Mohammad Hossein Rohban

published 04 May 2022

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3D fluorescence microscopy data synthesis for segmentation and benchmarking

Dennis Eschweiler, Malte Rethwisch, Mareike Jarchow, Simon Koppers, Johannes Stegmaier

published 02 Dec 2021

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Towards sustainable demersal fisheries: NepCon image acquisition system for automatic Nephrops norvegicus detection

Maria Sokolova, Fletcher Thompson, Patrizio Mariani, Ludvig Ahm Krag

published 16 Jun 2021

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Cell segmentation and tracking using CNN-based distance predictions and a graph-based matching strategy

Tim Scherr, Katharina Löffler, Moritz Böhland, Ralf Mikut

published 08 Dec 2020

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SMART-Q: An Integrative Pipeline Quantifying Cell Type-Specific RNA Transcription

Xiaoyu Yang, Seth Bergenholtz, Lenka Maliskova, Mark-Phillip Pebworth, Arnold R. Kriegstein, Yun Li, Yin Shen

published 29 Apr 2020

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Single-cell correlations of mRNA and protein content in a human monocytic cell line after LPS stimulation

Daniel M. Kalb, Samantha H. Adikari, Elizabeth Hong-Geller, James H. Werner

published 19 Apr 2019

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A fully-automated, robust, and versatile algorithm for long-term budding yeast segmentation and tracking

N. Ezgi Wood, Andreas Doncic

published 27 Mar 2019

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Automatic microarray image segmentation with clustering-based algorithms

Guifang Shao, Dongyao Li, Junfa Zhang, Jianbo Yang, Yali Shangguan

published 22 Jan 2019

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