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Morphogenic segmentation

Small hand-designed convolutional neural networks outperform transfer learning in automated cell shape detection in confluent tissues

Louis Combe, Mélina Durande, Hélène Delanoë-Ayari, Olivier Cochet-Escartin

Detection and measurement of butterfly eyespot and spot patterns using convolutional neural networks

Carolina Cunha, Hemaxi Narotamo, Antónia Monteiro, Margarida Silveira

microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation

Tim Scherr, Johannes Seiffarth, [ ... ], Ralf Mikut

PreciseEdge raster RGB image segmentation algorithm reduces user input for livestock digital body measurements highly correlated to real-world measurements

M. Jennifer Woodward-Greene, Jason M. Kinser, [ ... ], Curtis P. Van Tassell

LiveCellMiner: A new tool to analyze mitotic progression

Daniel Moreno-Andrés, Anuk Bhattacharyya, Anja Scheufen, Johannes Stegmaier

Image-based cell profiling enhancement via data cleaning methods

Arghavan Rezvani, Mahtab Bigverdi, Mohammad Hossein Rohban

3D fluorescence microscopy data synthesis for segmentation and benchmarking

Dennis Eschweiler, Malte Rethwisch, [ ... ], Johannes Stegmaier

Towards sustainable demersal fisheries: NepCon image acquisition system for automatic Nephrops norvegicus detection

Maria Sokolova, Fletcher Thompson, Patrizio Mariani, Ludvig Ahm Krag

Cell segmentation and tracking using CNN-based distance predictions and a graph-based matching strategy

Tim Scherr, Katharina Löffler, Moritz Böhland, Ralf Mikut

SMART-Q: An Integrative Pipeline Quantifying Cell Type-Specific RNA Transcription

Xiaoyu Yang, Seth Bergenholtz, [ ... ], Yin Shen

Single-cell correlations of mRNA and protein content in a human monocytic cell line after LPS stimulation

Daniel M. Kalb, Samantha H. Adikari, Elizabeth Hong-Geller, James H. Werner

A fully-automated, robust, and versatile algorithm for long-term budding yeast segmentation and tracking

N. Ezgi Wood, Andreas Doncic

Automatic microarray image segmentation with clustering-based algorithms

Guifang Shao, Dongyao Li, [ ... ], Yali Shangguan

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