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Microbial taxonomy

Metagenomic Profiling of Known and Unknown Microbes with MicrobeGPS

Martin S. Lindner, Bernhard Y. Renard

Evaluating the Impact of Different Sequence Databases on Metaproteome Analysis: Insights from a Lab-Assembled Microbial Mixture

Alessandro Tanca, Antonio Palomba, [ ... ], Sergio Uzzau

Microbial Diversity in the Midguts of Field and Lab-Reared Populations of the European Corn Borer Ostrinia nubilalis

Eugeni Belda, Laia Pedrola, [ ... ], Manuel Porcar

Effect of Saccharomyces boulardii and Mode of Delivery on the Early Development of the Gut Microbial Community in Preterm Infants

Natalia Zeber-Lubecka, Maria Kulecka, [ ... ], Jerzy Ostrowski

Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples

Katherine A. Maki, Brian Wolff, [ ... ], Jennifer J. Barb

Analysis of Metagenomic Data Containing High Biodiversity Levels

José R. Valverde, Rafael P. Mellado

Bifidobacteria Abundance-Featured Gut Microbiota Compositional Change in Patients with Behcet’s Disease

Jun Shimizu, Takao Kubota, [ ... ], Noboru Suzuki

Routine Habitat Change: A Source of Unrecognized Transient Alteration of Intestinal Microbiota in Laboratory Mice

Betty W. Ma, Nicholas A. Bokulich, [ ... ], Charles L. Bevins

Long-Term Nitrogen Amendment Alters the Diversity and Assemblage of Soil Bacterial Communities in Tallgrass Prairie

Joseph D. Coolon, Kenneth L. Jones, [ ... ], Michael A. Herman

The Gut Microbial Community of Midas Cichlid Fish in Repeatedly Evolved Limnetic-Benthic Species Pairs

Paolo Franchini, Carmelo Fruciano, [ ... ], Axel Meyer

Differential effects of synthetic psychoactive cathinones and amphetamine stimulants on the gut microbiome in mice

Mariana Angoa-Pérez, Branislava Zagorac, [ ... ], Donald M. Kuhn

The Bias Associated with Amplicon Sequencing Does Not Affect the Quantitative Assessment of Bacterial Community Dynamics

Federico M. Ibarbalz, María Victoria Pérez, Eva L. M. Figuerola, Leonardo Erijman

MetLab: An In Silico Experimental Design, Simulation and Analysis Tool for Viral Metagenomics Studies

Martin Norling, Oskar E. Karlsson-Lindsjö, [ ... ], Juliette Hayer

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