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Microbial taxonomy

Prokaryotic and eukaryotic microbiomes associated with blooms of the ichthyotoxic dinoflagellate Cochlodinium (Margalefidinium) polykrikoides in New York, USA, estuaries

Theresa K. Hattenrath-Lehmann, Jennifer Jankowiak, Florian Koch, Christopher J. Gobler

published 07 Nov 2019

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Framework for rational donor selection in fecal microbiota transplant clinical trials

Claire Duvallet, Caroline Zellmer, Pratik Panchal, Shrish Budree, Majdi Osman, Eric J. Alm

published 10 Oct 2019

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Suppression treatment differentially influences the microbial community and the occurrence of broad host range plasmids in the rhizosphere of the model cover crop Avena sativa L.

Marco Allegrini, Elena del V. Gomez, Kornelia Smalla, María Celina Zabaloy

published 09 Oct 2019

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Phylogenetic microbiota profiling in fecal samples depends on combination of sequencing depth and choice of NGS analysis method

Sukithar K. Rajan, Mårten Lindqvist, Robert Jan Brummer, Ida Schoultz, Dirk Repsilber

published 17 Sep 2019

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Bayesian hierarchical negative binomial models for multivariable analyses with applications to human microbiome count data

Amanda H. Pendegraft, Boyi Guo, Nengjun Yi

published 22 Aug 2019

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Archaeal community variation in the Qinhuangdao coastal aquaculture zone revealed by high-throughput sequencing

Shuping Wang, Xin Zheng, Huijuan Xia, Di Shi, Juntao Fan, Pengyuan Wang, Zhenguang Yan

published 21 Jun 2019

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Genomes from bacteria associated with the canine oral cavity: A test case for automated genome-based taxonomic assignment

David A. Coil, Guillaume Jospin, Aaron E. Darling, Corrin Wallis, Ian J. Davis, Stephen Harris, Jonathan A. Eisen, Lucy J. Holcombe, Ciaran O’Flynn

published 10 Jun 2019

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Exploration of antibiotic resistance risks in a veterinary teaching hospital with Oxford Nanopore long read sequencing

Kanishka Indiwari Kamathewatta, Rhys Nathan Bushell, Neil David Young, Mark Anthony Stevenson, Helen Billman-Jacobe, Glenn Francis Browning, Marc Serge Marenda

published 30 May 2019

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Does MHC heterozygosity influence microbiota form and function?

M. A. Wadud Khan, W. Zac Stephens, Ahmed Dawood Mohammed, June Louise Round, Jason Lee Kubinak

published 16 May 2019

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Characteristics of the tree shrew gut virome

Linxia Chen, Wenpeng Gu, Chenxiu Liu, Wenguang Wang, Na Li, Yang Chen, Caixia Lu, Xiaomei Sun, Yuanyuan Han, Dexuan Kuang, Pinfen Tong, Jiejie Dai

published 26 Feb 2019

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Characterization of the intestinal microbiota of the sea cucumber Holothuria glaberrima

María Pagán-Jiménez, Jean F. Ruiz-Calderón, María G. Dominguez-Bello, José E. García-Arrarás

published 30 Jan 2019

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Fecal microbiota changes associated with dehorning and castration stress primarily affects light-weight dairy calves

Raies A. Mir, Michael D. Kleinhenz, Johann F. Coetzee, Heather K. Allen, Indira T. Kudva

published 23 Jan 2019

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Screening human cell lines for viral infections applying RNA-Seq data analysis

Cord C. Uphoff, Claudia Pommerenke, Sabine A. Denkmann, Hans G. Drexler

published 10 Jan 2019

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