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Microbial taxonomy

Diversity of bacteria populations associated with different thallus regions of the brown alga Laminaria digitata

Maureen W. Ihua, Jamie A. FitzGerald, Freddy Guihéneuf, Stephen A. Jackson, Marcus J. Claesson, Dagmar B. Stengel, Alan D. W. Dobson

published 25 Nov 2020

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Spatio-temporal variations in bacterial and fungal community associated with dust aerosol in Kuwait

Fadila Al Salameen, Nazima Habibi, Saif Uddin, Khalil Al Mataqi, Vinod Kumar, Bashayer Al Doaij, Sami Al Amad, Ebtisam Al Ali, Faiz Shirshikhar

published 05 Nov 2020

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Baseline gut microbiome composition predicts metformin therapy short-term efficacy in newly diagnosed type 2 diabetes patients

Ilze Elbere, Ivars Silamikelis, Ilze Izabella Dindune, Ineta Kalnina, Monta Briviba, Linda Zaharenko, Laila Silamikele, Vita Rovite, Dita Gudra, Ilze Konrade, Jelizaveta Sokolovska, Valdis Pirags, Janis Klovins

published 30 Oct 2020

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Bacterial diversity and prevalence of antibiotic resistance genes in the oral microbiome

Viviane de Sousa Moreira Almeida, Jailton Azevedo, Helena Ferreira Leal, Artur Trancoso Lopo de Queiroz, Hermes Pedreira da Silva Filho, Joice Neves Reis

published 29 Sep 2020

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An approach to increase the success rate of cultivation of soil bacteria based on fluorescence-activated cell sorting

Laura Espina

published 31 Aug 2020

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Microbial communities can predict the ecological condition of headwater streams

Robert H. Hilderbrand, Stephen R. Keller, Sarah M. Laperriere, Alyson E. Santoro, Jason Cessna, Regina Trott

published 03 Aug 2020

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Classification of 16S rRNA reads is improved using a niche-specific database constructed by near-full length sequencing

Phillip R. Myer, Tara G. McDaneld, Larry A. Kuehn, Keith D. Dedonder, Michael D. Apley, Sarah F. Capik, Brian V. Lubbers, Gregory P. Harhay, Dayna M. Harhay, John W. Keele, Madison T. Henniger, Brooke A. Clemmons, Timothy P. L. Smith

published 13 Jul 2020

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Evaluation of variant calling for cpn60 barcode sequence-based microbiome profiling

Sarah J. Vancuren, Scott J. Dos Santos, Janet E. Hill, the Maternal Microbiome Legacy Project Team

published 09 Jul 2020

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The intestinal virome in children with cystic fibrosis differs from healthy controls

Michael J. Coffey, Ivan Low, Sacha Stelzer-Braid, Bernd Wemheuer, Millie Garg, Torsten Thomas, Adam Jaffe, William D. Rawlinson, Chee Y. Ooi

published 22 May 2020

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MinION Sequencing of colorectal cancer tumour microbiomes—A comparison with amplicon-based and RNA-Sequencing

William S. Taylor, John Pearson, Allison Miller, Sebastian Schmeier, Frank A. Frizelle, Rachel V. Purcell

published 20 May 2020

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Codon Pairs are Phylogenetically Conserved: A comprehensive analysis of codon pairing conservation across the Tree of Life

Justin B. Miller, Lauren M. McKinnon, Michael F. Whiting, John S. K. Kauwe, Perry G. Ridge

published 13 May 2020

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Assessment of the microbial interplay during anaerobic co-digestion of wastewater sludge using common components analysis

Francesc Puig-Castellví, Laëtitia Cardona, Delphine Jouan-Rimbaud Bouveresse, Christophe B. Y. Cordella, Laurent Mazéas, Douglas N. Rutledge, Olivier Chapleur

published 01 May 2020

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Machine learning using intrinsic genomic signatures for rapid classification of novel pathogens: COVID-19 case study

Gurjit S. Randhawa, Maximillian P. M. Soltysiak, Hadi El Roz, Camila P. E. de Souza, Kathleen A. Hill, Lila Kari

published 24 Apr 2020

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