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Microbial taxonomy

MinION Sequencing of colorectal cancer tumour microbiomes—A comparison with amplicon-based and RNA-Sequencing

William S. Taylor, John Pearson, Allison Miller, Sebastian Schmeier, Frank A. Frizelle, Rachel V. Purcell

published 20 May 2020

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Codon Pairs are Phylogenetically Conserved: A comprehensive analysis of codon pairing conservation across the Tree of Life

Justin B. Miller, Lauren M. McKinnon, Michael F. Whiting, John S. K. Kauwe, Perry G. Ridge

published 13 May 2020

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Assessment of the microbial interplay during anaerobic co-digestion of wastewater sludge using common components analysis

Francesc Puig-Castellví, Laëtitia Cardona, Delphine Jouan-Rimbaud Bouveresse, Christophe B. Y. Cordella, Laurent Mazéas, Douglas N. Rutledge, Olivier Chapleur

published 01 May 2020

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Machine learning using intrinsic genomic signatures for rapid classification of novel pathogens: COVID-19 case study

Gurjit S. Randhawa, Maximillian P. M. Soltysiak, Hadi El Roz, Camila P. E. de Souza, Kathleen A. Hill, Lila Kari

published 24 Apr 2020

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Metagenomics analysis reveals features unique to Indian distal gut microbiota

Kamaldeep Kaur, Indu Khatri, Akil Akhtar, Srikrishna Subramanian, T. N. C. Ramya

published 08 Apr 2020

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A restriction enzyme reduced representation sequencing approach for low-cost, high-throughput metagenome profiling

Melanie K. Hess, Suzanne J. Rowe, Tracey C. Van Stijn, Hannah M. Henry, Sharon M. Hickey, Rudiger Brauning, Alan F. McCulloch, Andrew S. Hess, Michelle R. Kirk, Sandeep Kumar, Cesar Pinares-Patiño, Sandra Kittelmann, Graham R. Wood, Peter H. Janssen, John C. McEwan

published 03 Apr 2020

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Microbiomes in the insectivorous bat species Mops condylurus rapidly converge in captivity

Kathryn M. Edenborough, Andre Mu, Kristin Mühldorfer, Johanna Lechner, Angelika Lander, Marcel Bokelmann, Emmanuel Couacy-Hymann, Aleksandar Radonic, Andreas Kurth

published 20 Mar 2020

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Characterization of gut microbiomes of household pets in the United States using a direct-to-consumer approach

Aashish R. Jha, Justin Shmalberg, Jirayu Tanprasertsuk, LeeAnn Perry, Dan Massey, Ryan W. Honaker

published 20 Feb 2020

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Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data

Kyle D. Brumfield, Anwar Huq, Rita R. Colwell, James L. Olds, Menu B. Leddy

published 13 Feb 2020

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Differential effects of synthetic psychoactive cathinones and amphetamine stimulants on the gut microbiome in mice

Mariana Angoa-Pérez, Branislava Zagorac, Andrew D. Winters, Jonathan M. Greenberg, Madison Ahmad, Kevin R. Theis, Donald M. Kuhn

published 24 Jan 2020

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Characterization of black patina from the Tiber River embankments using Next-Generation Sequencing

Federica Antonelli, Alfonso Esposito, Ludovica Calvo, Valerio Licursi, Philippe Tisseyre, Sandra Ricci, Manuela Romagnoli, Silvano Piazza, Francesca Guerrieri

published 09 Jan 2020

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Diversity and distribution of microbial communities in floral nectar of two night-blooming plants of the Sonoran Desert

Martin von Arx, Autumn Moore, Goggy Davidowitz, A. Elizabeth Arnold

published 12 Dec 2019

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Exploring thematic structure and predicted functionality of 16S rRNA amplicon data

Stephen Woloszynek, Joshua Chang Mell, Zhengqiao Zhao, Gideon Simpson, Michael P. O’Connor, Gail L. Rosen

published 11 Dec 2019

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