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Microbial taxonomy

Oral probiotic combination of Lactobacillus and Bifidobacterium alters the gastrointestinal microbiota during antibiotic treatment for Clostridium difficile infection

T. J. De Wolfe, S. Eggers, [ ... ], N. Safdar

Metagenomic Exploration of Viruses throughout the Indian Ocean

Shannon J. Williamson, Lisa Zeigler Allen, [ ... ], J. Craig Venter

Calculating Orthologs in Bacteria and Archaea: A Divide and Conquer Approach

Mihail R. Halachev, Nicholas J. Loman, Mark J. Pallen

Taxonomic and Functional Microbial Signatures of the Endemic Marine Sponge Arenosclera brasiliensis

Amaro E. Trindade-Silva, Cintia Rua, [ ... ], Fabiano L. Thompson

Association of metformin administration with gut microbiome dysbiosis in healthy volunteers

Ilze Elbere, Ineta Kalnina, [ ... ], Janis Klovins

Phylogenetic Affiliation of SSU rRNA Genes Generated by Massively Parallel Sequencing: New Insights into the Freshwater Protist Diversity

Najwa Taib, Jean-François Mangot, [ ... ], Didier Debroas

Functional Profiling of Unfamiliar Microbial Communities Using a Validated De Novo Assembly Metatranscriptome Pipeline

Mark Davids, Floor Hugenholtz, [ ... ], Peter J. Schaap

The functional microbiome of arthropods

Mauro Degli Esposti, Esperanza Martinez Romero

Taxon abundance, diversity, co-occurrence and network analysis of the ruminal microbiota in response to dietary changes in dairy cows

Ilma Tapio, Daniel Fischer, [ ... ], Johanna Vilkki

Association of Fecal Microbial Diversity and Taxonomy with Selected Enzymatic Functions

Roberto Flores, Jianxin Shi, [ ... ], James J. Goedert

Deep Illumina-Based Shotgun Sequencing Reveals Dietary Effects on the Structure and Function of the Fecal Microbiome of Growing Kittens

Oliver Deusch, Ciaran O’Flynn, [ ... ], Kelly S. Swanson

Comparative evaluation of a new magnetic bead-based DNA extraction method from fecal samples for downstream next-generation 16S rRNA gene sequencing

Kara D. McGaughey, Tulay Yilmaz-Swenson, [ ... ], Douglas E. Williamson

Characterization of gut microbiomes of household pets in the United States using a direct-to-consumer approach

Aashish R. Jha, Justin Shmalberg, [ ... ], Ryan W. Honaker

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