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Microbial taxonomy

Adaptation of the infant gut microbiome during the complementary feeding transition

Starin McKeen, Nicole C. Roy, Jane Adair Mullaney, Hannah Eriksen, Amy Lovell, Martin Kussman, Wayne Young, Karl Fraser, Clare R. Wall, Warren C. McNabb

published 14 Jul 2022

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Vaginal microbiome of women with adenomyosis: A case-control study

Jitsupa Kunaseth, Wanwisa Waiyaput, Prangwalai Chanchaem, Vorthon Sawaswong, Rattana Permpech, Sunchai Payungporn, Areepan Sophonsritsuk

published 16 Feb 2022

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Development of an efficient antimicrobial susceptibility testing method with species identification by Nanopore sequencing of 16S rRNA amplicons

Yuto Kawai, Naoya Ozawa, Takako Fukuda, Noriyuki Suzuki, Kazuki Mikata

published 03 Feb 2022

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NGS read classification using AI

Benjamin Voigt, Oliver Fischer, Christian Krumnow, Christian Herta, Piotr Wojciech Dabrowski

published 22 Dec 2021

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Divergence together with microbes: A comparative study of the associated microbiomes in the closely related Littorina species

Arina L. Maltseva, Marina A. Varfolomeeva, Elizaveta R. Gafarova, Marina A. Z. Panova, Natalia A. Mikhailova, Andrei I. Granovitch

published 21 Dec 2021

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Composition of nasal bacterial community and its seasonal variation in health care workers stationed in a clinical research laboratory

Nazima Habibi, Abu Salim Mustafa, Mohd Wasif Khan

published 24 Nov 2021

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The effect of soil sample size, for practical DNA extraction, on soil microbial diversity in different taxonomic ranks

Hiroki Morita, Satoshi Akao

published 18 Nov 2021

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Ubiquitous flocculation activity and flocculation production basis of the conglutination mud from Ruditapes philippinarum along the coast of China

Jun Mu, Yuxia Wang, Xia Cui, Qiao Yang

published 18 Nov 2021

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The importance of age in compositional and functional profiling of the human intestinal microbiome

Elio L. Herzog, Melania Wäfler, Irene Keller, Sebastian Wolf, Martin S. Zinkernagel, Denise C. Zysset-Burri

published 18 Oct 2021

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Bacterial diversity dynamics in microbial consortia selected for lignin utilization

Isis Viana Mendes, Mariana Botelho Garcia, Ana Carolina Araújo Bitencourt, Renata Henrique Santana, Philippe de Castro Lins, Rafaella Silveira, Blake A. Simmons, John M. Gladden, Ricardo Henrique Kruger, Betania Ferraz Quirino

published 13 Sep 2021

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Evaluation of DNA extraction protocols from liquid-based cytology specimens for studying cervical microbiota

Takeo Shibata, Mayumi Nakagawa, Hannah N. Coleman, Sarah M. Owens, William W. Greenfield, Toshiyuki Sasagawa, Michael S. Robeson II

published 30 Aug 2021

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The gut microbiome in sickle cell disease: Characterization and potential implications

Hassan Brim, James Taylor, Muneer Abbas, Kimberly Vilmenay, Mohammad Daremipouran, Sudhir Varma, Edward Lee, Betty Pace, Waogwende L. Song-Naba, Kalpna Gupta, Sergei Nekhai, Patricia O’Neil, Hassan Ashktorab

published 25 Aug 2021

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Simple mapping-based quantification of a mock microbial community using total RNA-seq data

Shigeharu Moriya

published 16 Jul 2021

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