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Microbial taxonomy

Quantification of diversity sampling bias resulting from rice root bacterial isolation on popular and nitrogen-free culture media using 16S amplicon barcoding

Moussa Sondo, Issa Wonni, Agnieszka Klonowska, Kadidia Koïta, Lionel Moulin

published 06 Apr 2023

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Omnicrobe, an open-access database of microbial habitats and phenotypes using a comprehensive text mining and data fusion approach

Sandra Dérozier, Robert Bossy, Louise Deléger, Mouhamadou Ba, Estelle Chaix, Olivier Harlé, Valentin Loux, Hélène Falentin, Claire Nédellec

published 20 Jan 2023

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Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples

Katherine A. Maki, Brian Wolff, Leonardo Varuzza, Stefan J. Green, Jennifer J. Barb

published 13 Jan 2023

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Chronic clinical signs of upper respiratory tract disease associate with gut and respiratory microbiomes in a cohort of domestic felines

Holly Kristin Arnold, Rhea Hanselmann, Sarah M. Duke, Thomas J. Sharpton, Brianna R. Beechler

published 01 Dec 2022

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A Metabologenomic approach reveals alterations in the gut microbiota of a mouse model of Alzheimer’s disease

Francesco Favero, Elettra Barberis, Mara Gagliardi, Stefano Espinoza, Liliana Contu, Stefano Gustincich, Francesca Boccafoschi, Chiara Borsotti, Dmitry Lim, Vito Rubino, Flavio Mignone, Edoardo Pasolli, Marcello Manfredi, Silvia Zucchelli, Davide Corà, Marco Corazzari

published 24 Aug 2022

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MiCloud: A unified web platform for comprehensive microbiome data analysis

Won Gu, Jeongsup Moon, Crispen Chisina, Byungkon Kang, Taesung Park, Hyunwook Koh

published 01 Aug 2022

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A taxonomically representative strain collection to explore xenobiotic and secondary metabolism in bacteria

Evanthia Kontomina, Vasiliki Garefalaki, Konstantina C. Fylaktakidou, Dorothea Evmorfidou, Athina Eleftheraki, Marina Avramidou, Karen Udoh, Maria Panopoulou, Tamás Felföldi, Károly Márialigeti, Giannoulis Fakis, Sotiria Boukouvala

published 14 Jul 2022

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Adaptation of the infant gut microbiome during the complementary feeding transition

Starin McKeen, Nicole C. Roy, Jane Adair Mullaney, Hannah Eriksen, Amy Lovell, Martin Kussman, Wayne Young, Karl Fraser, Clare R. Wall, Warren C. McNabb

published 14 Jul 2022

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Vaginal microbiome of women with adenomyosis: A case-control study

Jitsupa Kunaseth, Wanwisa Waiyaput, Prangwalai Chanchaem, Vorthon Sawaswong, Rattana Permpech, Sunchai Payungporn, Areepan Sophonsritsuk

published 16 Feb 2022

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Development of an efficient antimicrobial susceptibility testing method with species identification by Nanopore sequencing of 16S rRNA amplicons

Yuto Kawai, Naoya Ozawa, Takako Fukuda, Noriyuki Suzuki, Kazuki Mikata

published 03 Feb 2022

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NGS read classification using AI

Benjamin Voigt, Oliver Fischer, Christian Krumnow, Christian Herta, Piotr Wojciech Dabrowski

published 22 Dec 2021

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Divergence together with microbes: A comparative study of the associated microbiomes in the closely related Littorina species

Arina L. Maltseva, Marina A. Varfolomeeva, Elizaveta R. Gafarova, Marina A. Z. Panova, Natalia A. Mikhailova, Andrei I. Granovitch

published 21 Dec 2021

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Composition of nasal bacterial community and its seasonal variation in health care workers stationed in a clinical research laboratory

Nazima Habibi, Abu Salim Mustafa, Mohd Wasif Khan

published 24 Nov 2021

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