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Microbial taxonomy

Functional Assays and Metagenomic Analyses Reveals Differences between the Microbial Communities Inhabiting the Soil Horizons of a Norway Spruce Plantation

Stéphane Uroz, Panos Ioannidis, [ ... ], Francis Martin

Gut Microbiomes of Indian Children of Varying Nutritional Status

Tarini Shankar Ghosh, Sourav Sen Gupta, [ ... ], G. Balakrish Nair

Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups

Dongying Wu, Guillaume Jospin, Jonathan A. Eisen

CORE: A Phylogenetically-Curated 16S rDNA Database of the Core Oral Microbiome

Ann L. Griffen, Clifford J. Beall, [ ... ], Eugene J. Leys

Chamber Bioaerosol Study: Outdoor Air and Human Occupants as Sources of Indoor Airborne Microbes

Rachel I. Adams, Seema Bhangar, [ ... ], Thomas D. Bruns

Statistical analysis of co-occurrence patterns in microbial presence-absence datasets

Kumar P. Mainali, Sharon Bewick, [ ... ], William F. Fagan

A New Method for Extracting Skin Microbes Allows Metagenomic Analysis of Whole-Deep Skin

Marc Garcia-Garcerà, Koldo Garcia-Etxebarria, [ ... ], Francesc Calafell

Macroalgae Decrease Growth and Alter Microbial Community Structure of the Reef-Building Coral, Porites astreoides

Rebecca Vega Thurber, Deron E. Burkepile, [ ... ], Stephanie Rosales

MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads

Thomas Nordahl Petersen, Oksana Lukjancenko, [ ... ], Thomas Sicheritz-Pontén

The Effect of Primer Choice and Short Read Sequences on the Outcome of 16S rRNA Gene Based Diversity Studies

Jonas Ghyselinck, Stefan Pfeiffer, [ ... ], Paul De Vos

Two New Computational Methods for Universal DNA Barcoding: A Benchmark Using Barcode Sequences of Bacteria, Archaea, Animals, Fungi, and Land Plants

Akifumi S. Tanabe, Hirokazu Toju

Next Generation Sequencing to Define Prokaryotic and Fungal Diversity in the Bovine Rumen

Derrick E. Fouts, Sebastian Szpakowski, [ ... ], Karen E. Nelson

Phylogenetic Analysis of a Spontaneous Cocoa Bean Fermentation Metagenome Reveals New Insights into Its Bacterial and Fungal Community Diversity

Koen Illeghems, Luc De Vuyst, Zoi Papalexandratou, Stefan Weckx

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