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Microbial taxonomy

Shotgun metagenomic analysis of saliva microbiome suggests Mogibacterium as a factor associated with chronic bacterial osteomyelitis

Hiroko Yahara, Souichi Yanamoto, Miho Takahashi, Yuji Hamada, Takuya Asaka, Yoshimasa Kitagawa, Kuniyasu Moridera, Kazuma Noguchi, Yutaka Maruoka, Koji Yahara

published 06 May 2024

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Host influence on the eukaryotic virome of sympatric mosquitoes and abundance of diverse viruses with a broad host range

Côme Morel, Patricia Gil, Antoni Exbrayat, Etienne Loire, Florian Charriat, Baptiste Prepoint, Celine Condachou, Geoffrey Gimonneau, Assane Gueye Fall, Biram Biteye, Momar Talla Seck, Marc Eloit, Serafin Gutierrez

published 30 Apr 2024

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Detection of pathogenic bacteria in ticks from Isiolo and Kwale counties of Kenya using metagenomics

Bryson Brian Kimemia, Lillian Musila, Solomon Langat, Erick Odoyo, Stephanie Cinkovich, David Abuom, Santos Yalwala, Samoel Khamadi, Jaree Johnson, Eric Garges, Elly Ojwang, Fredrick Eyase

published 30 Apr 2024

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Exploring the interplay between the core microbiota, physicochemical factors, agrobiochemical cycles in the soil of the historic tokaj mád wine region

Judit Remenyik, László Csige, Péter Dávid, Péter Fauszt, Anna Anita Szilágyi-Rácz, Erzsébet Szőllősi, Zsófia Réka Bacsó, István Szepsy Jnr, Krisztina Molnár, Csaba Rácz, Gábor Fidler, Zoltán Kállai, László Stündl, Attila Csaba Dobos, Melinda Paholcsek

published 16 Apr 2024

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Bacterial diversity and composition on the rinds of specific melon cultivars and hybrids from across different growing regions in the United States

Madison Goforth, Victoria Obergh, Richard Park, Martin Porchas, Kevin M. Crosby, John L. Jifon, Sadhana Ravishankar, Paul Brierley, Daniel L. Leskovar, Thomas A. Turini, Jonathan Schultheis, Timothy Coolong, Rhonda Miller, Hisashi Koiwa, Bhimanagouda S. Patil, Margarethe A. Cooper, Steven Huynh, Craig T. Parker, Wenjing Guan, Kerry K. Cooper

published 11 Apr 2024

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Gradients of bacteria in the oceanic water column reveal finely-resolved vertical distributions

Rachel C. Harbeitner, Fabian Wittmers, Charmaine C. M. Yung, Charlotte A. Eckmann, Elisabeth Hehenberger, Marguerite Blum, David M. Needham, Alexandra Z. Worden

published 02 Apr 2024

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Investigating the relationship between microbial network features of giant kelp “seedbank” cultures and subsequent farm performance

Melisa G. Osborne, Ariel Levi Simons, Gary Molano, Bernadeth Tolentino, Anupam Singh, Gabriel J. Montecinos Arismendi, Filipe Alberto, Sergey V. Nuzhdin

published 27 Mar 2024

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Speeding genomic island discovery through systematic design of reference database composition

Steven L. Yu, Catherine M. Mageeney, Fatema Shormin, Noushin Ghaffari, Kelly P. Williams

published 13 Mar 2024

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The salivary microbiota of patients with acute lower respiratory tract infection–A multicenter cohort study

Matthew B. Rogers, Ashley Harner, Megan Buhay, Brian Firek, Barbara Methé, Alison Morris, Octavia M. Peck Palmer, Susan B. Promes, Robert L. Sherwin, Lauren Southerland, Alexandre R. Vieira, Sachin Yende, Michael J. Morowitz, David T. Huang

published 11 Jan 2024

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Diversity and spatiotemporal variations in bacterial and archaeal communities within Kuwaiti territorial waters of the Northwest Arabian Gulf

Saja A. Fakhraldeen, Sakinah Al-Haddad, Nazima Habibi, Surendraraj Alagarsamy, Sabeena F. K. Habeebullah, Abdulmuhsen K. Ali, Walid M. Al-Zakri

published 16 Nov 2023

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Integrating current analyses of the breast cancer microbiome

Sidra Sohail, Michael B. Burns

published 12 Sep 2023

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MT-MAG: Accurate and interpretable machine learning for complete or partial taxonomic assignments of metagenome-assembled genomes

Wanxin Li, Lila Kari, Yaoliang Yu, Laura A. Hug

published 18 Aug 2023

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The selection of software and database for metagenomics sequence analysis impacts the outcome of microbial profiling and pathogen detection

Ruijie Xu, Sreekumari Rajeev, Liliana C. M. Salvador

published 07 Apr 2023

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