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Microbial taxonomy

Bacterial and Phytoplankton Responses to Nutrient Amendments in a Boreal Lake Differ According to Season and to Taxonomic Resolution

Sari Peura, Alexander Eiler, Minna Hiltunen, Hannu Nykänen, Marja Tiirola, Roger I. Jones

published 08 Jun 2012

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A Rickettsiella Bacterium from the Hard Tick, Ixodes woodi: Molecular Taxonomy Combining Multilocus Sequence Typing (MLST) with Significance Testing

Andreas Leclerque, Regina G. Kleespies

published 31 May 2012

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Phylogenetic Analysis of a Spontaneous Cocoa Bean Fermentation Metagenome Reveals New Insights into Its Bacterial and Fungal Community Diversity

Koen Illeghems, Luc De Vuyst, Zoi Papalexandratou, Stefan Weckx

published 29 May 2012

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Next-Generation Sequencing Reveals Significant Bacterial Diversity of Botrytized Wine

Nicholas A. Bokulich, C. M. Lucy Joseph, Greg Allen, Andrew K. Benson, David A. Mills

published 01 May 2012

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Fast and Accurate Taxonomic Assignments of Metagenomic Sequences Using MetaBin

Vineet K. Sharma, Naveen Kumar, Tulika Prakash, Todd D. Taylor

published 04 Apr 2012

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Two-Stage Clustering (TSC): A Pipeline for Selecting Operational Taxonomic Units for the High-Throughput Sequencing of PCR Amplicons

Xiao-Tao Jiang, Hai Zhang, Hua-Fang Sheng, Yu Wang, Yan He, Fei Zou, Hong-Wei Zhou

published 11 Jan 2012

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Calculating Orthologs in Bacteria and Archaea: A Divide and Conquer Approach

Mihail R. Halachev, Nicholas J. Loman, Mark J. Pallen

published 12 Dec 2011

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Microbial Biogeography of Public Restroom Surfaces

Gilberto E. Flores, Scott T. Bates, Dan Knights, Christian L. Lauber, Jesse Stombaugh, Rob Knight, Noah Fierer

published 23 Nov 2011

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Arctic Ocean Microbial Community Structure before and after the 2007 Record Sea Ice Minimum

André M. Comeau, William K. W. Li, Jean-Éric Tremblay, Eddy C. Carmack, Connie Lovejoy

published 09 Nov 2011

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Substrate Type Determines Metagenomic Profiles from Diverse Chemical Habitats

Thomas C. Jeffries, Justin R. Seymour, Jack A. Gilbert, Elizabeth A. Dinsdale, Kelly Newton, Sophie S. C. Leterme, Ben Roudnew, Renee J. Smith, Laurent Seuront, James G. Mitchell

published 23 Sep 2011

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Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems

Lucie Zinger, Linda A. Amaral-Zettler, Jed A. Fuhrman, M. Claire Horner-Devine, Susan M. Huse, David B. Mark Welch, Jennifer B. H. Martiny, Mitchell Sogin, Antje Boetius, Alban Ramette

published 08 Sep 2011

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The Phylogenetic Diversity of Metagenomes

Steven W. Kembel, Jonathan A. Eisen, Katherine S. Pollard, Jessica L. Green

published 31 Aug 2011

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Culture Enriched Molecular Profiling of the Cystic Fibrosis Airway Microbiome

Christopher D. Sibley, Margot E. Grinwis, Tyler R. Field, Christina S. Eshaghurshan, Monica M. Faria, Scot E. Dowd, Michael D. Parkins, Harvey R. Rabin, Michael G. Surette

published 28 Jul 2011

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