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Microbial taxonomy

CLUSTOM: A Novel Method for Clustering 16S rRNA Next Generation Sequences by Overlap Minimization

Kyuin Hwang, Jeongsu Oh, Tae-Kyung Kim, Byung Kwon Kim, Dong Su Yu, Bo Kyeng Hou, Gustavo Caetano-Anollés, Soon Gyu Hong, Kyung Mo Kim

published 01 May 2013

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A Cross-Taxon Analysis of Insect-Associated Bacterial Diversity

Ryan Thomas Jones, Leticia Gonzales Sanchez, Noah Fierer

published 16 Apr 2013

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Exploration of Noncoding Sequences in Metagenomes

Fabián Tobar-Tosse, Adrián C. Rodríguez, Patricia E. Vélez, María M. Zambrano, Pedro A. Moreno

published 25 Mar 2013

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Diversity and Abundance of the Bacterial Community of the Red Macroalga Porphyra umbilicalis: Did Bacterial Farmers Produce Macroalgae?

Lilibeth N. Miranda, Keith Hutchison, Arthur R. Grossman, Susan H. Brawley

published 20 Mar 2013

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Phylogenetic Affiliation of SSU rRNA Genes Generated by Massively Parallel Sequencing: New Insights into the Freshwater Protist Diversity

Najwa Taib, Jean-François Mangot, Isabelle Domaizon, Gisèle Bronner, Didier Debroas

published 14 Mar 2013

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Analysis of Metagenomic Data Containing High Biodiversity Levels

José R. Valverde, Rafael P. Mellado

published 07 Mar 2013

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The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses

Tomáš Větrovský, Petr Baldrian

published 27 Feb 2013

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Functional Assays and Metagenomic Analyses Reveals Differences between the Microbial Communities Inhabiting the Soil Horizons of a Norway Spruce Plantation

Stéphane Uroz, Panos Ioannidis, Juliette Lengelle, Aurélie Cébron, Emmanuelle Morin, Marc Buée, Francis Martin

published 13 Feb 2013

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Characterization of the Vaginal Micro- and Mycobiome in Asymptomatic Reproductive-Age Estonian Women

Tiina Drell, Triin Lillsaar, Lea Tummeleht, Jaak Simm, Anu Aaspõllu, Edda Väin, Ivo Saarma, Andres Salumets, Gilbert G. G. Donders, Madis Metsis

published 23 Jan 2013

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Biased Diversity Metrics Revealed by Bacterial 16S Pyrotags Derived from Different Primer Sets

Lin Cai, Lin Ye, Amy Hin Yan Tong, Si Lok, Tong Zhang

published 14 Jan 2013

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Taxonomic Classification of Bacterial 16S rRNA Genes Using Short Sequencing Reads: Evaluation of Effective Study Designs

Orna Mizrahi-Man, Emily R. Davenport, Yoav Gilad

published 07 Jan 2013

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Statistical Object Data Analysis of Taxonomic Trees from Human Microbiome Data

Patricio S. La Rosa, Berkley Shands, Elena Deych, Yanjiao Zhou, Erica Sodergren, George Weinstock, William D. Shannon

published 09 Nov 2012

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CREST – Classification Resources for Environmental Sequence Tags

Anders Lanzén, Steffen L. Jørgensen, Daniel H. Huson, Markus Gorfer, Svenn Helge Grindhaug, Inge Jonassen, Lise Øvreås, Tim Urich

published 08 Nov 2012

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