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Microbial taxonomy

SDT: A Virus Classification Tool Based on Pairwise Sequence Alignment and Identity Calculation

Brejnev Muhizi Muhire, Arvind Varsani, Darren Patrick Martin

The Microbiome of Brazilian Mangrove Sediments as Revealed by Metagenomics

Fernando Dini Andreote, Diego Javier Jiménez, [ ... ], Itamar Soares de Melo

A Comparison of Methods for Clustering 16S rRNA Sequences into OTUs

Wei Chen, Clarence K. Zhang, [ ... ], Hongyu Zhao

Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis

Adam G. Clooney, Fiona Fouhy, [ ... ], Marcus J. Claesson

The Phylogenetic Diversity of Metagenomes

Steven W. Kembel, Jonathan A. Eisen, Katherine S. Pollard, Jessica L. Green

Next-Generation Sequencing Reveals Significant Bacterial Diversity of Botrytized Wine

Nicholas A. Bokulich, C. M. Lucy Joseph, [ ... ], David A. Mills

Microbiota Dynamics in Patients Treated with Fecal Microbiota Transplantation for Recurrent Clostridium difficile Infection

Yang Song, Shashank Garg, [ ... ], W. Florian Fricke

A Taxonomic Signature of Obesity in the Microbiome? Getting to the Guts of the Matter

Mariel M. Finucane, Thomas J. Sharpton, Timothy J. Laurent, Katherine S. Pollard

Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data

Kyle D. Brumfield, Anwar Huq, [ ... ], Menu B. Leddy

A Metagenomic Framework for the Study of Airborne Microbial Communities

Shibu Yooseph, Cynthia Andrews-Pfannkoch, [ ... ], J. Craig Venter

Arctic Ocean Microbial Community Structure before and after the 2007 Record Sea Ice Minimum

André M. Comeau, William K. W. Li, [ ... ], Connie Lovejoy

An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline (STAP)

Dongying Wu, Amber Hartman, Naomi Ward, Jonathan A. Eisen

Taxonomic Precision of Different Hypervariable Regions of 16S rRNA Gene and Annotation Methods for Functional Bacterial Groups in Biological Wastewater Treatment

Feng Guo, Feng Ju, Lin Cai, Tong Zhang

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