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Microbial taxonomy

MetaMetaDB: A Database and Analytic System for Investigating Microbial Habitability

Ching-chia Yang, Wataru Iwasaki

published 27 Jan 2014

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Host-Specificity and Dynamics in Bacterial Communities Associated with Bloom-Forming Freshwater Phytoplankton

Inessa Lacativa Bagatini, Alexander Eiler, Stefan Bertilsson, Dag Klaveness, Letícia Piton Tessarolli, Armando Augusto Henriques Vieira

published 20 Jan 2014

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A Taxonomic Signature of Obesity in the Microbiome? Getting to the Guts of the Matter

Mariel M. Finucane, Thomas J. Sharpton, Timothy J. Laurent, Katherine S. Pollard

published 08 Jan 2014

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A Metagenomic Framework for the Study of Airborne Microbial Communities

Shibu Yooseph, Cynthia Andrews-Pfannkoch, Aaron Tenney, Jeff McQuaid, Shannon Williamson, Mathangi Thiagarajan, Daniel Brami, Lisa Zeigler-Allen, Jeff Hoffman, Johannes B. Goll, Douglas Fadrosh, John Glass, Mark D. Adams, Robert Friedman, J. Craig Venter

published 11 Dec 2013

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Evaluating the Impact of Different Sequence Databases on Metaproteome Analysis: Insights from a Lab-Assembled Microbial Mixture

Alessandro Tanca, Antonio Palomba, Massimo Deligios, Tiziana Cubeddu, Cristina Fraumene, Grazia Biosa, Daniela Pagnozzi, Maria Filippa Addis, Sergio Uzzau

published 09 Dec 2013

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Microbiota Dynamics in Patients Treated with Fecal Microbiota Transplantation for Recurrent Clostridium difficile Infection

Yang Song, Shashank Garg, Mohit Girotra, Cynthia Maddox, Erik C. von Rosenvinge, Anand Dutta, Sudhir Dutta, W. Florian Fricke

published 26 Nov 2013

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Soil Bacterial Community Shifts after Chitin Enrichment: An Integrative Metagenomic Approach

Samuel Jacquiod, Laure Franqueville, Sébastien Cécillon, Timothy M. Vogel, Pascal Simonet

published 20 Nov 2013

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Characterization of the Vaginal Microbiota among Sexual Risk Behavior Groups of Women with Bacterial Vaginosis

Christina A. Muzny, Imran R. Sunesara, Ranjit Kumar, Leandro A. Mena, Michael E. Griswold, David H. Martin, Elliot J. Lefkowitz, Jane R. Schwebke

published 13 Nov 2013

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Deciphering the Bacterial Microbiome of Citrus Plants in Response to ‘Candidatus Liberibacter asiaticus’-Infection and Antibiotic Treatments

Muqing Zhang, Charles A. Powell, Lesley S. Benyon, Hui Zhou, Yongping Duan

published 08 Nov 2013

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Two New Computational Methods for Universal DNA Barcoding: A Benchmark Using Barcode Sequences of Bacteria, Archaea, Animals, Fungi, and Land Plants

Akifumi S. Tanabe, Hirokazu Toju

published 18 Oct 2013

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Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups

Dongying Wu, Guillaume Jospin, Jonathan A. Eisen

published 17 Oct 2013

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Taxonomic Precision of Different Hypervariable Regions of 16S rRNA Gene and Annotation Methods for Functional Bacterial Groups in Biological Wastewater Treatment

Feng Guo, Feng Ju, Lin Cai, Tong Zhang

published 16 Oct 2013

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A New Method for Extracting Skin Microbes Allows Metagenomic Analysis of Whole-Deep Skin

Marc Garcia-Garcerà, Koldo Garcia-Etxebarria, Mireia Coscollà, Amparo Latorre, Francesc Calafell

published 20 Sep 2013

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