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Microbial taxonomy

Bioinformatic Approaches Reveal Metagenomic Characterization of Soil Microbial Community

Zhuofei Xu, Martin Asser Hansen, Lars H. Hansen, Samuel Jacquiod, Søren J. Sørensen

published 01 Apr 2014

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WGSQuikr: Fast Whole-Genome Shotgun Metagenomic Classification

David Koslicki, Simon Foucart, Gail Rosen

published 13 Mar 2014

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Parallel-META 2.0: Enhanced Metagenomic Data Analysis with Functional Annotation, High Performance Computing and Advanced Visualization

Xiaoquan Su, Weihua Pan, Baoxing Song, Jian Xu, Kang Ning

published 03 Mar 2014

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Architectural Design Drives the Biogeography of Indoor Bacterial Communities

Steven W. Kembel, James F. Meadow, Timothy K. O’Connor, Gwynne Mhuireach, Dale Northcutt, Jeff Kline, Maxwell Moriyama, G. Z. Brown, Brendan J. M. Bohannan, Jessica L. Green

published 29 Jan 2014

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MetaMetaDB: A Database and Analytic System for Investigating Microbial Habitability

Ching-chia Yang, Wataru Iwasaki

published 27 Jan 2014

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Host-Specificity and Dynamics in Bacterial Communities Associated with Bloom-Forming Freshwater Phytoplankton

Inessa Lacativa Bagatini, Alexander Eiler, Stefan Bertilsson, Dag Klaveness, Letícia Piton Tessarolli, Armando Augusto Henriques Vieira

published 20 Jan 2014

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A Taxonomic Signature of Obesity in the Microbiome? Getting to the Guts of the Matter

Mariel M. Finucane, Thomas J. Sharpton, Timothy J. Laurent, Katherine S. Pollard

published 08 Jan 2014

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A Metagenomic Framework for the Study of Airborne Microbial Communities

Shibu Yooseph, Cynthia Andrews-Pfannkoch, Aaron Tenney, Jeff McQuaid, Shannon Williamson, Mathangi Thiagarajan, Daniel Brami, Lisa Zeigler-Allen, Jeff Hoffman, Johannes B. Goll, Douglas Fadrosh, John Glass, Mark D. Adams, Robert Friedman, J. Craig Venter

published 11 Dec 2013

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Evaluating the Impact of Different Sequence Databases on Metaproteome Analysis: Insights from a Lab-Assembled Microbial Mixture

Alessandro Tanca, Antonio Palomba, Massimo Deligios, Tiziana Cubeddu, Cristina Fraumene, Grazia Biosa, Daniela Pagnozzi, Maria Filippa Addis, Sergio Uzzau

published 09 Dec 2013

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Microbiota Dynamics in Patients Treated with Fecal Microbiota Transplantation for Recurrent Clostridium difficile Infection

Yang Song, Shashank Garg, Mohit Girotra, Cynthia Maddox, Erik C. von Rosenvinge, Anand Dutta, Sudhir Dutta, W. Florian Fricke

published 26 Nov 2013

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Soil Bacterial Community Shifts after Chitin Enrichment: An Integrative Metagenomic Approach

Samuel Jacquiod, Laure Franqueville, Sébastien Cécillon, Timothy M. Vogel, Pascal Simonet

published 20 Nov 2013

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Characterization of the Vaginal Microbiota among Sexual Risk Behavior Groups of Women with Bacterial Vaginosis

Christina A. Muzny, Imran R. Sunesara, Ranjit Kumar, Leandro A. Mena, Michael E. Griswold, David H. Martin, Elliot J. Lefkowitz, Jane R. Schwebke

published 13 Nov 2013

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Deciphering the Bacterial Microbiome of Citrus Plants in Response to ‘Candidatus Liberibacter asiaticus’-Infection and Antibiotic Treatments

Muqing Zhang, Charles A. Powell, Lesley S. Benyon, Hui Zhou, Yongping Duan

published 08 Nov 2013

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