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Microbial taxonomy

SDT: A Virus Classification Tool Based on Pairwise Sequence Alignment and Identity Calculation

Brejnev Muhizi Muhire, Arvind Varsani, Darren Patrick Martin

published 26 Sep 2014

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Metagenomic Survey for Viruses in Western Arctic Caribou, Alaska, through Iterative Assembly of Taxonomic Units

Anita C. Schürch, Debby Schipper, Maarten A. Bijl, Jim Dau, Kimberlee B. Beckmen, Claudia M. E. Schapendonk, V. Stalin Raj, Albert D. M. E. Osterhaus, Bart L. Haagmans, Morten Tryland, Saskia L. Smits

published 20 Aug 2014

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Profile Hidden Markov Models for the Detection of Viruses within Metagenomic Sequence Data

Peter Skewes-Cox, Thomas J. Sharpton, Katherine S. Pollard, Joseph L. DeRisi

published 20 Aug 2014

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Random Whole Metagenomic Sequencing for Forensic Discrimination of Soils

Anastasia S. Khodakova, Renee J. Smith, Leigh Burgoyne, Damien Abarno, Adrian Linacre

published 11 Aug 2014

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Deep Illumina-Based Shotgun Sequencing Reveals Dietary Effects on the Structure and Function of the Fecal Microbiome of Growing Kittens

Oliver Deusch, Ciaran O’Flynn, Alison Colyer, Penelope Morris, David Allaway, Paul G. Jones, Kelly S. Swanson

published 10 Jul 2014

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Main Functions and Taxonomic Distribution of Virulence Genes in Brucella melitensis 16 M

Aniel Jessica Leticia Brambila-Tapia, Dagoberto Armenta-Medina, Nancy Rivera-Gomez, Ernesto Perez-Rueda

published 25 Jun 2014

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The Bias Associated with Amplicon Sequencing Does Not Affect the Quantitative Assessment of Bacterial Community Dynamics

Federico M. Ibarbalz, María Victoria Pérez, Eva L. M. Figuerola, Leonardo Erijman

published 12 Jun 2014

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Gut Microbiomes of Indian Children of Varying Nutritional Status

Tarini Shankar Ghosh, Sourav Sen Gupta, Tanudeep Bhattacharya, Deepak Yadav, Anamitra Barik, Abhijit Chowdhury, Bhabatosh Das, Sharmila S. Mande, G. Balakrish Nair

published 24 Apr 2014

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Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia

Luisa W. Hugerth, Emilie E. L. Muller, Yue O. O. Hu, Laura A. M. Lebrun, Hugo Roume, Daniel Lundin, Paul Wilmes, Anders F. Andersson

published 22 Apr 2014

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Coal-Packed Methane Biofilter for Mitigation of Green House Gas Emissions from Coal Mine Ventilation Air

Hendy Limbri, Cindy Gunawan, Torsten Thomas, Andrew Smith, Jason Scott, Bettina Rosche

published 17 Apr 2014

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The Gut Microbial Community of Midas Cichlid Fish in Repeatedly Evolved Limnetic-Benthic Species Pairs

Paolo Franchini, Carmelo Fruciano, Tancred Frickey, Julia C. Jones, Axel Meyer

published 14 Apr 2014

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Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys

Michael C. Nelson, Hilary G. Morrison, Jacquelynn Benjamino, Sharon L. Grim, Joerg Graf

published 10 Apr 2014

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Biochemical Properties of Ectoine Hydroxylases from Extremophiles and Their Wider Taxonomic Distribution among Microorganisms

Nils Widderich, Astrid Höppner, Marco Pittelkow, Johann Heider, Sander H. J. Smits, Erhard Bremer

published 08 Apr 2014

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