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Microbial genetics

Persistent Salmonella enterica serovar Typhi sub-populations within host interrogated by whole genome sequencing and metagenomics

Eby M. Sim, Qinning Wang, Peter Howard, Rady Kim, Ling Lim, Kirsty Hope, Vitali Sintchenko

published 23 Aug 2023

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MT-MAG: Accurate and interpretable machine learning for complete or partial taxonomic assignments of metagenome-assembled genomes

Wanxin Li, Lila Kari, Yaoliang Yu, Laura A. Hug

published 18 Aug 2023

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Genomic characterization of Campylobacter isolates in Huzhou, China

Xiaofang Wu, Lei Ji, Yuehua Shen, Liping Chen, Deshun Xu, Fenfen Dong

published 17 Aug 2023

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Evaluation of an inducible knockout system in insect cells based on co-infection and CRISPR/Cas9

Christina Sophie Hausjell, Miriam Klausberger, Wolfgang Ernst, Reingard Grabherr

published 27 Jul 2023

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The selection and validation of reference genes for quantitative real-time PCR studies in near-isogenic susceptible and resistant tomato lines, infected with the geminivirus tomato curly stunt virus

Mamokete Bokhale, Imanu Mwaba, Farhahna Allie

published 27 Jul 2023

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Description and genome-wide analysis of Profundicola chukchiensis gen. nov., sp. nov., marine bacteria isolated from bottom sediments of the Chukchi Sea

Lyudmila Romanenko, Nadezhda Otstavnykh, Valeriya Kurilenko, Peter Velansky, Viacheslav Eremeev, Valery Mikhailov, Marina P. Isaeva

published 26 Jul 2023

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A macroecological perspective on genetic diversity in the human gut microbiome

William R. Shoemaker

published 21 Jul 2023

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Highly mismatch-tolerant homology testing by RecA could explain how homology length affects recombination

Mara Prentiss, Dianzhuo Wang, Jonathan Fu, Chantal Prévost, Veronica Godoy-Carter, Nancy Kleckner, Claudia Danilowicz

published 13 Jul 2023

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Pregnancy-induced differential expression of SARS-CoV-2 and influenza a viral entry factors in the lower respiratory tract

Tusar Giri, Santosh Panda, Arvind Palanisamy

published 12 Jul 2023

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Distinctive microbial community and genome structure in coastal seawater from a human-made port and nearby offshore island in northern Taiwan facing the Northwestern Pacific Ocean

Chi-Yu Shih, Shiow-Yi Chen, Chun-Ru Hsu, Ching-Hsiang Chin, Wei-Chih Chiu, Mei-Hung Chang, Lee-Kuo Kang, Cing-Han Yang, Tun-Wen Pai, Chin-Hwa Hu, Pang-Hung Hsu, Wen-Shyong Tzou

published 09 Jun 2023

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Genome analysis of biosurfactant producing bacterium, Bacillus tequilensis

Anuraj Nayarisseri, Sanjeev Kumar Singh

published 02 Jun 2023

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Identification and initial characterization of Hfq-associated sRNAs in Histophilus somni strain 2336

Bindu Subhadra, Dianjun Cao, Roderick Jensen, Clayton Caswell, Thomas J. Inzana

published 23 May 2023

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Large genomic deletions delineate Mycobacterium tuberculosis L4 sublineages in South American countries

Andres Baena, Felipe Cabarcas, Juan C. Ocampo, Luis F. Barrera, Juan F. Alzate

published 19 May 2023

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