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Microbial genetics

TLR Ligands Induce Antiviral Responses in Chicken Macrophages

Neda Barjesteh, Shahriar Behboudi, Jennifer T. Brisbin, Alexander Ian Villanueva, Éva Nagy, Shayan Sharif

published 28 Aug 2014

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Whole Genome Sequencing and Analysis of Plant Growth Promoting Bacteria Isolated from the Rhizosphere of Plantation Crops Coconut, Cocoa and Arecanut

Alka Gupta, Murali Gopal, George V. Thomas, Vinu Manikandan, John Gajewski, George Thomas, Somasekar Seshagiri, Stephan C. Schuster, Preeti Rajesh, Ravi Gupta

published 27 Aug 2014

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Comparative Analysis of Functional Metagenomic Annotation and the Mappability of Short Reads

Rogan Carr, Elhanan Borenstein

published 22 Aug 2014

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A Quantitative Comparison of Single-Cell Whole Genome Amplification Methods

Charles F. A. de Bourcy, Iwijn De Vlaminck, Jad N. Kanbar, Jianbin Wang, Charles Gawad, Stephen R. Quake

published 19 Aug 2014

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CTAG-Containing Cleavage Site Profiling to Delineate Salmonella into Natural Clusters

Le Tang, Wei-Qiao Liu, Xin Fang, Qiang Sun, Song-Ling Zhu, Chun-Xiao Wang, Xiao-Yu Wang, Yong-Guo Li, Da-Ling Zhu, Kenneth E. Sanderson, Randal N. Johnston, Gui-Rong Liu, Shu-Lin Liu

published 19 Aug 2014

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The Complete Genome Sequence of Escherichia coli EC958: A High Quality Reference Sequence for the Globally Disseminated Multidrug Resistant E. coli O25b:H4-ST131 Clone

Brian M. Forde, Nouri L. Ben Zakour, Mitchell Stanton-Cook, Minh-Duy Phan, Makrina Totsika, Kate M. Peters, Kok Gan Chan, Mark A. Schembri, Mathew Upton, Scott A. Beatson

published 15 Aug 2014

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Mobility and Generation of Mosaic Non-Autonomous Transposons by Tn3-Derived Inverted-Repeat Miniature Elements (TIMEs)

Magdalena Szuplewska, Marta Ludwiczak, Katarzyna Lyzwa, Jakub Czarnecki, Dariusz Bartosik

published 14 Aug 2014

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Rapid Detection of Mycobacterium tuberculosis by Recombinase Polymerase Amplification

David S. Boyle, Ruth McNerney, Hwee Teng Low, Brandon Troy Leader, Ailyn C. Pérez-Osorio, Jessica C. Meyer, Denise M. O'Sullivan, David G. Brooks, Olaf Piepenburg, Matthew S. Forrest

published 13 Aug 2014

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Bacterial Community Affects Toxin Production by Gymnodinium catenatum

Maria E. Albinsson, Andrew P. Negri, Susan I. Blackburn, Christopher J. S. Bolch

published 12 Aug 2014

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An Interferon Response Gene Signature Is Associated with the Therapeutic Response of Hepatitis C Patients

Lawrence M. Pfeffer, Kui Li, Jaquelyn F. Fleckenstein, Tony N. Marion, Joel Diament, Chuan He Yang, Susan R. Pfeffer, Meiyun Fan, Elizabeth Handorf, Charles R. Handorf

published 11 Aug 2014

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A Novel High-Resolution Single Locus Sequence Typing Scheme for Mixed Populations of Propionibacterium acnes In Vivo

Christian F. P. Scholz, Anders Jensen, Hans B. Lomholt, Holger Brüggemann, Mogens Kilian

published 11 Aug 2014

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An Unclassified Microorganism: Novel Pathogen Candidate Lurking in Human Airways

Kazumasa Fukuda, Kazuhiro Yatera, Midori Ogawa, Toshinori Kawanami, Kei Yamasaki, Shingo Noguchi, Robert S. Murphy, Hiroshi Mukae, Hatsumi Taniguchi

published 31 Jul 2014

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Fast and Sensitive Alignment of Microbial Whole Genome Sequencing Reads to Large Sequence Datasets on a Desktop PC: Application to Metagenomic Datasets and Pathogen Identification

Lőrinc S. Pongor, Roberto Vera, Balázs Ligeti

published 31 Jul 2014

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