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Microbial genetics

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

Bruce J. Walker, Thomas Abeel, Terrance Shea, Margaret Priest, Amr Abouelliel, Sharadha Sakthikumar, Christina A. Cuomo, Qiandong Zeng, Jennifer Wortman, Sarah K. Young, Ashlee M. Earl

published 19 Nov 2014

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Variable Episomal Silencing of a Recombinant Herpesvirus Renders Its Encoded GFP an Unreliable Marker of Infection in Primary Cells

Thomas J. Ellison, Dean H. Kedes

published 17 Nov 2014

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Comparative Genomic Analysis Shows That Avian Pathogenic Escherichia coli Isolate IMT5155 (O2:K1:H5; ST Complex 95, ST140) Shares Close Relationship with ST95 APEC O1:K1 and Human ExPEC O18:K1 Strains

Xiangkai Zhu Ge, Jingwei Jiang, Zihao Pan, Lin Hu, Shaohui Wang, Haojin Wang, Frederick C. Leung, Jianjun Dai, Hongjie Fan

published 14 Nov 2014

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Inflammation-Induced Reactivation of the Ranavirus Frog Virus 3 in Asymptomatic Xenopus laevis

Jacques Robert, Leon Grayfer, Eva-Stina Edholm, Brian Ward, Francisco De Jesús Andino

published 12 Nov 2014

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Toxin-Antitoxin Systems in the Mobile Genome of Acidithiobacillus ferrooxidans

Paula Bustamante, Mario Tello, Omar Orellana

published 10 Nov 2014

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Characterization of the YdeO Regulon in Escherichia coli

Yuki Yamanaka, Taku Oshima, Akira Ishihama, Kaneyoshi Yamamoto

published 06 Nov 2014

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Toll-Like Receptor Responses to Peste des petits ruminants Virus in Goats and Water Buffalo

Sakthivel Dhanasekaran, Moanaro Biswas, Ambothi R. Vignesh, R. Ramya, Gopal Dhinakar Raj, Krishnaswamy G. Tirumurugaan, Angamuthu Raja, Ranjit S. Kataria, Satya Parida, Elankumaran Subbiah

published 04 Nov 2014

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A Phylogeny-Based Benchmarking Test for Orthology Inference Reveals the Limitations of Function-Based Validation

Kalliopi Trachana, Kristoffer Forslund, Tomas Larsson, Sean Powell, Tobias Doerks, Christian von Mering, Peer Bork

published 04 Nov 2014

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MetaGeniE: Characterizing Human Clinical Samples Using Deep Metagenomic Sequencing

Arun Rawat, David M. Engelthaler, Elizabeth M. Driebe, Paul Keim, Jeffrey T. Foster

published 03 Nov 2014

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Comparative Genomics to Delineate Pathogenic Potential in Non-O157 Shiga Toxin-Producing Escherichia coli (STEC) from Patients with and without Haemolytic Uremic Syndrome (HUS) in Norway

Kjersti Haugum, Jostein Johansen, Christina Gabrielsen, Lin T. Brandal, Kåre Bergh, David W. Ussery, Finn Drabløs, Jan Egil Afset

published 31 Oct 2014

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The Predatory Bacterium Bdellovibrio bacteriovorus Aspartyl-tRNA Synthetase Recognizes tRNA^Asn as a Substrate

Ariel Alperstein, Brittany Ulrich, Denise M. Garofalo, Ruth Dreisbach, Hannah Raff, Kelly Sheppard

published 22 Oct 2014

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The Functional Potential of Microbial Communities in Hydraulic Fracturing Source Water and Produced Water from Natural Gas Extraction Characterized by Metagenomic Sequencing

Arvind Murali Mohan, Kyle J. Bibby, Daniel Lipus, Richard W. Hammack, Kelvin B. Gregory

published 22 Oct 2014

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MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems

Sophie S. Abby, Bertrand Néron, Hervé Ménager, Marie Touchon, Eduardo P. C. Rocha

published 17 Oct 2014

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