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Microbial genetics

Metagenomics of the Deep Mediterranean, a Warm Bathypelagic Habitat

Ana-Belen Martín-Cuadrado, Purificación López-García, [ ... ], Francisco Rodríguez-Valera

Optimizing Taq Polymerase Concentration for Improved Signal-to-Noise in the Broad Range Detection of Low Abundance Bacteria

Rudolph Spangler, Noel L. Goddard, David S. Thaler

Pebble and Rock Band: Heuristic Resolution of Repeats and Scaffolding in the Velvet Short-Read de Novo Assembler

Daniel R. Zerbino, Gayle K. McEwen, Elliott H. Margulies, Ewan Birney

Exploring Metabolic Pathway Reconstruction and Genome-Wide Expression Profiling in Lactobacillus reuteri to Define Functional Probiotic Features

Delphine M. Saulnier, Filipe Santos, [ ... ], James Versalovic

Comparative Metagenomic Analysis of Soil Microbial Communities across Three Hexachlorocyclohexane Contamination Levels

Naseer Sangwan, Pushp Lata, [ ... ], Rup Lal

Single Virus Genomics: A New Tool for Virus Discovery

Lisa Zeigler Allen, Thomas Ishoey, [ ... ], Shannon J. Williamson

The Complete Genome Sequence of Haloferax volcanii DS2, a Model Archaeon

Amber L. Hartman, Cédric Norais, [ ... ], Jonathan A. Eisen

These Are Not the K-mers You Are Looking For: Efficient Online K-mer Counting Using a Probabilistic Data Structure

Qingpeng Zhang, Jason Pell, [ ... ], C. Titus Brown

Methylobacterium Genome Sequences: A Reference Blueprint to Investigate Microbial Metabolism of C1 Compounds from Natural and Industrial Sources

Stéphane Vuilleumier, Ludmila Chistoserdova, [ ... ], Mary E. Lidstrom

Complete Genome Sequence and Comparative Metabolic Profiling of the Prototypical Enteroaggregative Escherichia coli Strain 042

Roy R. Chaudhuri, Mohammed Sebaihia, [ ... ], Ian R. Henderson

Genetic Characterization of Atypical Citrobacter freundii

Gabriela Delgado, Valeria Souza, [ ... ], Alejandro Cravioto

Accurate Genome Relative Abundance Estimation Based on Shotgun Metagenomic Reads

Li C. Xia, Jacob A. Cram, [ ... ], Fengzhu Sun

Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes

Shoko Iwai, Thomas Weinmaier, [ ... ], Todd Z. DeSantis

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