Microbial genetics

Vitamin D enhances antiviral responses in dengue virus-infected macrophages by modulating early-response gene expression

Yordi Sebastián Tamayo-Molina, Juan Felipe Valdés-López, Geysson J. Fernandez, Silvio Urcuqui-Inchima

published 21 Aug 2025

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Investigation of mobile genetic elements and their association with antibiotic resistance genes in clinical pathogens worldwide

Markus H. K. Johansson, Thomas N. Petersen, Sidsel Nag, Timmie M. R. Lagermann, Laura E.K. Birkedahl, Silva Tafaj, Susan Bradbury, Peter Collignon, Denise Daley, Victorien Dougnon, Kafayath Fabiyi, Boubacar Coulibaly, Réné Dembélé, Natama Magloire, Isidore J. Ouindgueta, Zenat Z. Hossain, Anowara Begoum, Deyan Donchev, Mathew Diggle, LeeAnn Turnbull, Simon Lévesque, Livia Berlinger, Kirstine K. Søgaard, Paula D. Guevara, Carolina Duarte, Panagiota Maikanti, Jana Amlerova, Pavel Drevinek, Jan Tkadlec, Milica Dilas, Achim Kaasch, Henrik T. Westh, Mohamed A. Bachtarzi, Wahiba Amhis, Carolina E.S. Salazar, José E. Villacis, Mária A. D. Lúzon, Dàmaris B. Palau, Claire Duployez, Maxime Paluche, Solomon Asante-Sefa, Mie Møller, Margaret Ip, Ivana Mareković, Agnes Pál-Sonnevend, Clementiza E. Cocuzza, Asta Dambrauskiene, Alexandre Macanze, Anelsio Cossa, Inácio Mandomando, Philip Nwajiobi-Princewill, Iruka N. Okeke, Aderemi O. Kehinde, Ini Adebiyi, Ifeoluwa Akintayo, Oluwafemi Popoola, Anthony Onipede, Anita Blomfeldt, Nora E. Nyquist, Kiri Bocker, James Ussher, Amjad Ali, Nimat Ullah, Habibullah Khan, Natalie W. Gustafson, Ikhlas Jarrar, Arif Al-Hamad, Viravarn Luvira, Wantana Paveenkittiporn, Irmak Baran, James C. L. Mwansa, Linda Sikakwa, Kaunda Yamba, Frank M. Aarestrup

published 18 Aug 2025

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Genome-driven insights into Bacillus safensis strain B7 as a seed coating agent for plant growth promotion and alleviation of biotic and abiotic stresses

Maissa Ben-Jabeur, Zayneb Kthiri, Salma Jallouli, Kalthoum Harbaoui, Zoubeir Chamekh, Sawsen Ayadi, Youssef Trifa, Walid Hamada

published 18 Aug 2025

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The porphyran degradation system is complete, phylogenetically and geographically diverse across the gut microbiota of East Asian populations

Laure Ségurel, Thirumalai Selvi Ulaganathan, Sophie Mathieu, Mélanie Loiodice, Laurent Poulet, Sophie Drouillard, Miroslaw Cygler, William Helbert

published 01 Aug 2025

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OpDetect: A convolutional and recurrent neural network classifier for precise and sensitive operon detection from RNA-seq data

Rezvan Karaji, Lourdes Peña-Castillo

published 01 Aug 2025

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Genetic clustering within massive Porites species complex is the primary driver of holobiont assembly

Carly B. Scott, Raegen Schott, Mikhail V. Matz

published 17 Jul 2025

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Whole genome-based reclassification of several species of the genus Nonomuraea

Noureddine Bouras, Imen Nouioui, Guendouz Dif, Fawzia Chaabane Chaouch, Sherif S. Ebada

published 01 Jul 2025

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Comparative genomics of Lentilactobacillus buchneri reveals strain-level hyperdiversity and broad-spectrum CRISPR immunity against human and livestock gut phages

Ismail Gumustop, Ibrahim Genel, Ibrahim Cagri Kurt, Fatih Ortakci

published 10 Jun 2025

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A new nodule-associated bacterium, Cupriavidus consociatus sp. nov. Isolated from the root nodules of Leucaena sp. and Arachis sp. growing in a cacao field in Chiapas, Mexico

Erika-Yanet Tapia-García, Belén Chávez-Ramírez, Violeta Larios-Serrato, Ivan Arroyo-Herrera, J. Antonio Ibarra, Paulina Estrada-de los Santos

published 27 May 2025

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Cellular transcriptomics of arrested normal lung fibroblasts IMR-90 infected with Human Adenovirus 5 E1A mutants

Rafe Helwer, Peter Pelka

published 27 May 2025

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Comparative genomic analysis of Streptococcus suis sequence type 105 and development of a PCR diagnostic tool

Parichart Boueroy, Peechanika Chopjitt, Jednipit Borthong, Thidathip Wongsurawat, Piroon Jenjaroenpun, Rapeephan Duangjanchot, Bhanubong Saiboonjan, Rujirat Hatrongjit, Anusak Kerdsin

published 20 May 2025

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Аmygdala DEGs are associated with the immune system function: A comparative transcriptomic study of high- and low-excitability rat strains

Irina Shalaginova, Marina Pavlova, Natalia Dyuzhikova

published 15 May 2025

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Identification of stable reference genes in Edwardsiella ictaluri for accurate gene expression analysis

Jingjun Lu, Hossam Abdelhamed, Nawar Al-Janabi, Nour Eissa, Mark Lawrence, Attila Karsi

published 02 May 2025

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Microbial genetics

Vitamin D enhances antiviral responses in dengue virus-infected macrophages by modulating early-response gene expression

Investigation of mobile genetic elements and their association with antibiotic resistance genes in clinical pathogens worldwide

Genome-driven insights into Bacillus safensis strain B7 as a seed coating agent for plant growth promotion and alleviation of biotic and abiotic stresses

The porphyran degradation system is complete, phylogenetically and geographically diverse across the gut microbiota of East Asian populations

OpDetect: A convolutional and recurrent neural network classifier for precise and sensitive operon detection from RNA-seq data

Genetic clustering within massive Porites species complex is the primary driver of holobiont assembly

Whole genome-based reclassification of several species of the genus Nonomuraea

Comparative genomics of Lentilactobacillus buchneri reveals strain-level hyperdiversity and broad-spectrum CRISPR immunity against human and livestock gut phages

A new nodule-associated bacterium, Cupriavidus consociatus sp. nov. Isolated from the root nodules of Leucaena sp. and Arachis sp. growing in a cacao field in Chiapas, Mexico

Cellular transcriptomics of arrested normal lung fibroblasts IMR-90 infected with Human Adenovirus 5 E1A mutants

Comparative genomic analysis of Streptococcus suis sequence type 105 and development of a PCR diagnostic tool

Аmygdala DEGs are associated with the immune system function: A comparative transcriptomic study of high- and low-excitability rat strains

Identification of stable reference genes in Edwardsiella ictaluri for accurate gene expression analysis

Microbial genetics

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